Scaffold Ga0209599_10002806

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10002806
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6981
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029440	Metagenome	188	N
F072344	Metagenome	121	N
F078699	Metagenome	116	Y
F078721	Metagenome	116	N
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100028061	F078699	GGA	MIYCNRGNEMKVGFQVAGTMQIPDGAIVHEDYLHQTYALEFNNKMYMLQVCLVAESPDGEYEMLHQFEEMEEHGIKNVRYDAAEFEPIVED
Ga0209599_100028063	F084222	AGGA	MSRELYLSRLALEIEKHEERGNVRKAQELHNYFLKVANIRDMDPEAFADDYREEQDLMPQLNEEYYGEYQENPDEDIVDDSLGSDMYDHDVNEFKKDTSSNAMNLINSLREELQHNDLALKILDILEEELD
Ga0209599_100028067	F029440	GGA	MYDLAVKNNKFIHIAPRDLKKKDIDWKMRPICDRINASDYCWTVFCCQGHFSGNQKGGLPYLVLLCVNEKRPDVLNKLYSAFEVDEKYDERFPLCGPRSNMMLISMGSKDENFTYVTIHFNAQGKNDQDYCVKIMDRFSRTI
Ga0209599_100028068	F078721	GAGG	MIVDVSGINKLMDIWGEDCICFFNETETTLINLRNHFEDNNLNFPIEEIKYPYRENSFKDNILLIVNNKKNKDDLKISSRENIDLDV
Ga0209599_100028069	F072344	AGG	MAFYVIALHQLKCYNADMFRVYLNKCHCKLIIKTLDLHKTIIKGEINKISPLMMENKKTQIKYNYDFEESFDFRAHSFFNLLCDLEEEHVKRYFNVLQLYPRSDIIVGVKKKLYLLIGFLSGDLNDVLPVSFSSDEVIVIKLSLELYSNLLCGKFEILSKVFEGLSIDLNFESIISSLCENRDLFTNLVDKNSPLNISSNLIYYKGKWAWDMLGVLRGSEFEKIGSIPLIKIEEVDDSRRIRY