Scaffold Ga0209599_10002053

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10002053
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8750
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004051	Metagenome / Metatranscriptome	455	Y
F013184	Metagenome / Metatranscriptome	273	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000205310	F013184	GAGG	LKYYNFVIKLAGSVYARNEEEANEKINLHLDDLGQVESAKFDLNWPDVSWDLEYELC
Ga0209599_1000205311	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLENWINSNLDEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL
Ga0209599_1000205315	F001043	AGGAG	MSDYKDGFDDGYKFAREEMMEKLAEIDIADIDTWILDRLCEMIEGGKL
Ga0209599_1000205317	F003422	N/A	MSTDLVSTKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVNATIAPTTTKEEKMENPTTTTVPDTYNPNLLVTYKVIKGYSDPEYATDKVTSIEWDLHNARQNSKHNAVLLSKIDTVKDIITEAYGDSDDQETLRSIAEALDIALTRTIEWSATIEVSGTMELDLLEDSDTDVESEIYDNLTVDSNHGNIEVIDQEVTNVREN
Ga0209599_1000205318	F002935	AGG	MRDRTKGYVGNVLDGKKLATIATEIVKAQYNNPSELTVDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLWNGRVFISVEKVKACQTLFKEDISDYIRTFGSRLDSNCSLWQSKMSVAPATILG
Ga0209599_1000205323	F004051	N/A	KEAKMTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLLGA
Ga0209599_100020535	F001019	AGGA	MSPYEPSLEILEVEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELEYETTR
Ga0209599_100020538	F063705	GGAGG	LTRSSVFLEYMKLHLISLRQDWEDTLNRMPLKDDEYDPSDAYFEGAIAATEHLLSVATDIMNNSNERVN
Ga0209599_100020539	F001460	GGAG	MLGYTESDLNKMINAIHDAKLFYLRTPSDLMDKTELRADLEMAVSFMQGLWAEGYFD