NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10001997

Scaffold Ga0209599_10001997


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001997 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8928
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F019816Metagenome227Y
F020348Metagenome224N
F020651Metagenome / Metatranscriptome222Y
F048948Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000199710F020348GGAMEIEHRNFLDDNIGNWHTVQNGYVRNIDLDILKMYEHIYRKYMSADFILTVWCGNCIFDMIKRLYTWYEEQPKPKRNAKSN
Ga0209599_1000199714F011074GGAGMQGFSGERIRSLNSTIFKQNLVYLMQLVGITNPGEVKLAILEDWIRTQYGNFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVIDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNNTGIKTWTKEDGAVAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKLGKVSFS
Ga0209599_1000199719F019816N/AMRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTNLEPLAFGQNIDTNPGIDQVQ
Ga0209599_100019972F048948GAGGMRKLNAIWLLLTHKAYFLAVCKTGKDGDDMTTIGHYTYAMAETLINKHIADVDTFLDQEDAIDEANDIINGIL
Ga0209599_100019977F020651N/AMKVAILLLTQNRHDLTQRVIKQNFYNSGYNADCFLIDNGSDTHENFNYPFAGYDLSKEKRGIAAGVNAGLRITQNYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDAVGGYNEEYDPYGMQDRDYGERATISGFTNYYLPDMRSEHIGHDVGNGTDYRRMKDESLARAQSVWEKYQDIYHNQKNIRCEYFV

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