Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10001997 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10001997 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8928
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8928

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F020651	Metagenome / Metatranscriptome	222	Y
F048948	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000199710	F020348	GGA	MEIEHRNFLDDNIGNWHTVQNGYVRNIDLDILKMYEHIYRKYMSADFILTVWCGNCIFDMIKRLYTWYEEQPKPKRNAKSN
Ga0209599_1000199714	F011074	GGAG	MQGFSGERIRSLNSTIFKQNLVYLMQLVGITNPGEVKLAILEDWIRTQYGNFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVIDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNNTGIKTWTKEDGAVAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKLGKVSFS
Ga0209599_1000199719	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTNLEPLAFGQNIDTNPGIDQVQ
Ga0209599_100019972	F048948	GAGG	MRKLNAIWLLLTHKAYFLAVCKTGKDGDDMTTIGHYTYAMAETLINKHIADVDTFLDQEDAIDEANDIINGIL
Ga0209599_100019977	F020651	N/A	MKVAILLLTQNRHDLTQRVIKQNFYNSGYNADCFLIDNGSDTHENFNYPFAGYDLSKEKRGIAAGVNAGLRITQNYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDAVGGYNEEYDPYGMQDRDYGERATISGFTNYYLPDMRSEHIGHDVGNGTDYRRMKDESLARAQSVWEKYQDIYHNQKNIRCEYFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10001997

Overview

Ecosystem & Geography

Associated Families

Sequences