Scaffold Ga0209599_10001841

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10001841
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9441
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030090	Metagenome	186	Y
F033036	Metagenome	178	N
F035766	Metagenome	171	Y
F050317	Metagenome	145	N
F072276	Metagenome	121	Y
F072338	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000184111	F072276	N/A	MSKTLIETSTKKRFATKFMVLENHKPTEESVVVFKDSEDSPNFLVIRYERDAEGKMVQRGTLEEVNEEQFKREHAPHANWDNTSLREYDQKFQDWRSSTLMQKLEQVGEDEV
Ga0209599_1000184114	F030090	N/A	MEDPRATQLKAQYNQVVMSVARNTYLKAQELIRDLNEAKIRDEDKNEIRLHLIKMVTTKPTEINKP
Ga0209599_100018412	F033036	N/A	MNYEIEDLQGLMNDLSTIGLSRKSLVFKTHYGFGEDLQGVNDGVTPLYITKEGADLMHDAKFGRRIKETTLAIIWSNWEKAPTRSWTETPLPAADLVESGLYRVGLFQSSPRMHFPGDLPPERVKMAYELLLDQILKIRFDEE
Ga0209599_1000184124	F050317	AGGAG	MQEEKYYIVAAGGYLPKPVVEEIVIKESEMAESEDDFSDFEDYKTYILEEAAAEFDQRFAKSIILTEAQAKEVSVYLTK
Ga0209599_1000184126	F035766	N/A	MTTQKFKVLGVEQGITITRPFNNEMYNHNDKVREMQNDAILAALEALKDSEDEDLIEKAAKACSGYGYGSGYDAIDMIEDAMKNVETTNNSWMREEIWPDFIKLGLVQPLDTDYVGYKKL
Ga0209599_1000184127	F072338	N/A	MKKPEFKIGDLVGFKGRGLGFGRIVSMNLRDKQEPLYHVELLSRDTLVATHGECIEKLSPEDLELVQSLHSIGNL