Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10001743 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10001743 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9796
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9796

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000174310	F009462	N/A	MIMELHESIRDTYKEVVIKNDIGFRLTLKKHEVISPKGLFSIDMVQESLKTDGTVSDSQTYNFFMTSEELQKLASGLTV
Ga0209599_1000174312	F026556	GGAGG	MTSALIKLIFGIALIVIAIAIGPLLGIWSLNTLFPALNIPFNIETWAAFAILLGGASGIRYKK
Ga0209599_1000174316	F003080	N/A	MTTAKDLTDQLINRAKNLKEFVVERDFNRIPAGVVKFDIQHTVGQTAKLFVPALTQDEAEQMVDEWFEDDV
Ga0209599_1000174318	F002977	GGA	MQPQSPAEGILKTNEWGDSKVYRVVCECTDSMHDHNVWVEADEHEISITIYATVRSNFWSKTRWYHMWSLLTKGYVDTETTLVMRKQGALNYAETLKSAIIDVEEFRKEKNVKN
Ga0209599_100017435	F026795	AGGA	MAKNYKDVNYFETRPDIVKIFDDLEAYLDWCRLEMAPFDESHLYNRESWAWRNFEKRNRPKKPWNGERKPYLGTKPQYNRNQ
Ga0209599_100017439	F043407	GGA	MSTISTNTISTINPGYGAVPPGGVGLSPLTIGQVYTTNNTNGAFLTSNGINGTSWTNTNEVMRINQTNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFEAIKGDDNGTT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10001743

Overview

Ecosystem & Geography

Associated Families

Sequences