NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10001404

Scaffold Ga0209599_10001404


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001404 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11560
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012663Metagenome / Metatranscriptome278Y
F040602Metagenome / Metatranscriptome161Y
F041738Metagenome / Metatranscriptome159Y
F071029Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000140410F041738N/AMEKIKAFVYNNPVRVAAFVSSAVALVASFLVPDVPTETVVAFVLSALGLGEYAQRAENRKTDEALFSEIPSEDDLV
Ga0209599_1000140414F012663GGAMMLHFTCTQCQREFSADELPRRGEICFACHVRTVRLGFTYGQEDFHGPTIAERQRQTVEQAKINGYNAEPVTNWM
Ga0209599_1000140415F001396GGAMLSSVWVPIIVAIIMGPVVVVLQKLRKENTEQHSEGRILLKMIGTKVDRIGTKLDEHIGWHDGQKDAE
Ga0209599_100014044F071029N/AMSENSLDPRQEKFLNWLCTPANGRVPSSQNQYAIAEGVDETTLRRWKKKPIFKQEWERRINEQQQSPERTQQLLDNLFQRALEGDNNSAKLYLQATGRLAPVQLQVEHSGKASELSDIELAELIAANAASEQRFRLETRTVKASDDNNE
Ga0209599_100014045F040602AGGMTTTNDAMYVALKAMYPTAGDTLGDLLYAHWSNVGLGFRGALQFDYYVSQGAVGTTLGDLANNFWSDPDFVVSNLEDESGNDLLLEDGSFMLLEVGNG
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