Scaffold Ga0209599_10001264

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10001264
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12466
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.13%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003542	Metagenome / Metatranscriptome	480	Y
F011393	Metagenome / Metatranscriptome	291	Y
F017998	Metagenome	237	Y
F024555	Metagenome / Metatranscriptome	205	Y
F048784	Metagenome	147	Y
F084218	Metagenome	112	N
F087181	Metagenome	110	N
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000126413	F001754	N/A	MTQYNNFAASKMSNNPRFEVIVSYTDFLGKTHNIVCNSRPALKRANEFLKMFKTESVAINKILAEYPVVLGKFPKKYHSEIKKELANAGFSTVSNFLIK
Ga0209599_1000126414	F048784	N/A	MNQTTEKLVSIFNQDELAALMTAMGGYINTKSKQRRSTGIEVVAFNKIVDALLVANYMNAVEVVPKAGRVGVAEYKLAEAAGQY
Ga0209599_1000126415	F084218	N/A	MSISKVIKQDLIDMVKTHDWSYMMSDSHSVWEVGMRHEAGIRAKIHALVGIHREDGIGLCDEIKDIAGPDYTDYNEDGFGLKYRTIHSWFKPYIGE
Ga0209599_1000126417	F003542	GGA	MEYSYYLYYVIKLKDMSKVNFDYDLFSEKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMRKMLGDNPNNCNPSGYYSSVRRCLKEIGVCSFDTTKRCMVKGRNWDRFVSDEDWSWFIMRTGSCEYSTIIK
Ga0209599_1000126419	F017998	N/A	MNLERLDLEKYEQLELERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNRQYEYSTLGKNKSPKFSVSSILSILK
Ga0209599_1000126423	F090305	N/A	MLTIRNIESLNLTKLGYWKVNDAEASRPTKWCMTEHYCIRLHRDGEAAAILIWRNINPLTKQYHVDVCYDDFTNKIYEGAFSKRVIMDKGHFLASMMGYIKAEHTLRNKK
Ga0209599_1000126428	F024555	N/A	MLTIKNIEKLYKLNVGNWRIGKVETLNTSYLMQLYKYNSMETKQVNIERTPIGEGDTSLYELWFWDDGKPIRRLLRKCDFELGPLYVIKNIENMMNLK
Ga0209599_100012643	F011393	N/A	MGEQVAYNKCEHCNVELHENESGEYYPVVNRMDKHTNIRGEYIPIGNRFQYPRNWGKKRGATILLETRIADKIKVLEDTKAELSKLQACLDKVNEWDADILN
Ga0209599_1000126430	F087181	N/A	MSFGEIVFALVMSGIVGLWVYGIIITDGDTIRRILWDDTMLGWGWRKLFGEKKKAKQAPIPSFQSIPPPPVRTLTAKKAAPKGFNTSSLNVPPLNHIGKPLVIQNWDRLAGMAVMVFGRRWIVVQAFHASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVYCEGRTEIMDVGVCKDPNRLLHEVTYTFNEKFR