Scaffold Ga0209599_10001139

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10001139
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13497
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F003542	Metagenome / Metatranscriptome	480	Y
F005389	Metagenome / Metatranscriptome	402	Y
F010916	Metagenome / Metatranscriptome	297	Y
F011393	Metagenome / Metatranscriptome	291	Y
F017998	Metagenome	237	Y
F018718	Metagenome / Metatranscriptome	233	Y
F031098	Metagenome / Metatranscriptome	183	N
F087181	Metagenome	110	N
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000113911	F018718	N/A	MTLREYYVSKYPTDELGVELNETPTFTGLLNQLIVGGDVYKYIGVGDSIIRERLFEGLAEELNVKYDYVYELWLKN
Ga0209599_1000113915	F005389	N/A	MANKSKATAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG
Ga0209599_1000113917	F001754	GGA	MVKTPYLYSVINDKNMNTIYNNFAASKMSNNPKFQVVVTFTDFMGKTHNIVCNNRKKLAEANQFLKMFKTESVKINQILSEYPVVLGKYPKKYHSEIKRELASAGFSAVSNFLIK
Ga0209599_1000113918	F003291	N/A	MTINQTTEKLVSIFNQDELAALMTAMGGYINTKNKQRRSTGIEVVAFNKIVDALLVANYMNAEEIEVKPNANAPMGSAAYKAWEAMYDSDVLAHR
Ga0209599_1000113919	F010916	N/A	MSISNTIKQDLIGLVSGHDWSYMMSDSHSVWEAGNKVEREIMAKIHALCAIHKEDAEALYSEIKDIAGPDYSDYDANGNGLKYRTINSWFTTYVPYTTIHPELESK
Ga0209599_1000113920	F003542	N/A	MSKVNFDYDLFSEKIGYDSVNKMYLIRVYDLLVFEMNTNPKPTWTGIMKKMLGDNPKDCNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGNNWDRFVSSEDWSWFIMRTGSCEYSTIIK
Ga0209599_1000113921	F031098	N/A	MKTYYDIHILSYSGDTIIINGVSYSQMMQIARANPNCQKIEVVKEYSKKINKY
Ga0209599_1000113923	F017998	N/A	MNLERLDLEKYEALELERNRTIADPLYQQWMSELGVSSSYTDREGIIRANDLNSQYDYTSLAENKSTKFSVSSILSILK
Ga0209599_1000113926	F090305	AGG	MLTIQNIEGLNDTVISGWKVTDAEACRPTKWLMTEHYCIRLNKYGEAAAILIDRWINPLTKQYHVYVCYEDFSNKIYEGAFTKRVIMDKGHFLKHMMGYITAEYEMRKQK
Ga0209599_1000113930	F087181	N/A	MSFGEIVFALIMSGILGLWVYGIIVSDGDTMRRIFWDNTAMGWIWREYFTKKKKAKQAPIPSFQSIPPPPARRLTAKKAAPKGFNTSSLNVPPLNHIGKPLVIQNWDRIAGMATMVFGKRWFVVGALHTSNGYECTLASSQSINTTTFYIYDTMYDSHRVSVYCGGRTEIMDVGVCKDPNRLLYELAYTFNEKFR
Ga0209599_100011397	F000785	AGGA	MRVTNKRGMKFDCAKLMNWAQDLLGPSKCNTIAFTFDTTEESLGWYDWDNIIWINLASCKRMIAVQKTILHEWTHAQQTYRWYNHYNLKYGYKNNPYEIQARENEKLVKRAYKKRK
Ga0209599_100011398	F011393	GAG	MPKGEQIAYNKCEHCNVELFTNDAGEYYPVVNRLDKHTLMRGEYIPIGNRFQYPRNWGKKKGATILLETRIADKIKVLEDTQSELSKLQACLEKVNEWDETILN