Scaffold Ga0209599_10001114

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10001114
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13771
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (55.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F039139	Metagenome	164	N
F039635	Metagenome / Metatranscriptome	163	N
F043397	Metagenome	156	N
F054860	Metagenome	139	N
F060908	Metagenome / Metatranscriptome	132	Y
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100011141	F011760	N/A	MENTTTKRMVMRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNSFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSMLDKMFEPYAITPVVESPTFLFEI
Ga0209599_1000111411	F103253	GGA	MEEKVWIYLSKTGTGFELAGTDIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIYGSYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNANS
Ga0209599_1000111414	F039139	N/A	MSMFLNSFEFTTEDITTILRAHDTDISINELVEISDALDFDSIARTALMFDSNEDQLQAALSHAEDLMIMDGLCITEPKRFQMP
Ga0209599_1000111415	F060908	N/A	MTRKLDYTVSKTISTSEKISTQTKNRIHIPKKYASYIGLNKGFVAHITNLNGAYIITAYPTPESKKYMVDKDGAVRFTVEKNEYKIMIADSVVILL
Ga0209599_100011142	F011390	AGGAG	MKIQTTKYGLCTVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANVFNIGSTLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIVDID
Ga0209599_1000111422	F054860	AGAAG	LNITLKNARINYQNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVTQFREWCSIQPPIYDRQSGNTYKYNADIHVNDCLTQYIGNQSKVAVS
Ga0209599_1000111427	F043397	AGGAG	MPRYAVYIPFTYSYGGEPVDEEFDSIVKAENEKDAIQEAITELEGEYVIKTLNSDEITVEEVPEFPSFDEWEETYTALKNPHAYEGEQGLGEIMFDTDGDQYQTVRGFDSEKIWTVRSTEYGLILTAGLGVVDRFGYILSEQPVTEEDKDKAYVID
Ga0209599_1000111429	F039635	AGGA	MTEAQANKIKIKVEVFNELYAPITLRFQMFSTSENNWAVTITYNYTENEWMTFASLDSSYNQINDKLSGFQFGIEAVEAYQEENGNLKFSHSDLPLG