Scaffold Ga0209599_10000993

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000993
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14884
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F003714	Metagenome / Metatranscriptome	472	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000099323	F001725	N/A	MAAISNGTTCIYGVAGTVTNLFVQSYSLSSSFNADVTVVDETGLTKTHRLDDRKSEITIEGIAKTTAMPTLGAALSFTVNTASAYPAGSASASFVGTITKIDDKGSNKGFTAVTITAIDYEGITPA
Ga0209599_1000099324	F001055	N/A	MGTKSIRHIVESTVATYLSTQTGLTTITFLTGDSAATQTLPKAIVLCESARNPSDLPEGEGNYMCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA
Ga0209599_1000099326	F001298	N/A	MSLYGDELLNDAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWSQPDGSIGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLLVIDDNQ
Ga0209599_100009934	F000957	GAGG	MTSFRHLDGMLGLLSELYEINERILTGDILSNKAAINSKRMEKLLKHYHEALSEDGASDIRLEAYAAAGGWVGITYSYTFDGFEVAGSQVPRRA
Ga0209599_100009937	F003714	N/A	MPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITNTTWVNLNKRGPYRRQK
Ga0209599_100009938	F042864	N/A	MSTPIKPKAELVFDKAMHELLKRKVVDFRKAASLKDRDGCVKGLGSYALYGVDHTRGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTVLCWHLA