NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000836

Scaffold Ga0209599_10000836


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000836 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17352
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (61.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F009750Metagenome313Y
F024557Metagenome205Y
F070110Metagenome123N
F081344Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000083621F070110N/AMLLDDYPIVIWFIKKSRNSYCLYDSCGQLVMRRDEKRKKDIYQYCEDNGIDLQEEF
Ga0209599_1000083625F009750N/AMKEIITAISKYGTFKENKILRPHLMDRLGIRLMFPEGSQCILWTNGRKYYARCEAFGTLFTVNIPQKMGDDIWLRFKTQFEGNYSYEDI
Ga0209599_1000083627F001561GGAGMQTREQRLKYLNKTIDTLWHGVQDTKTGDYPKIVNLYKEVLKIEPKDRDAWENMVWLMWSLAINNKDTAWLLEAEKFARRYLSIMPNGYRSYEYVGMFYRSMIKDEKLAVRFYESAIRWKDAPESTHHSLISICEKSGDKLKAIGYCKMTLARFPNDPYTKSKLKTLTQN
Ga0209599_1000083628F024557AGGAMNSFVWIYFSKTGMGYEIKGSDAISGFDAFISMDGTYLIEYAFSDMMDSMHFFIYEWDNSQKKRRTVFESYKRELILVGMVKHMDKIPTEIKEKIIEMYMDDSEDLELEKNANS
Ga0209599_100008365F081344GGAGGMTLDMVNRLLYVVVCAGGVLAFFGHMRFYTITGLKVLKNILTIIACATPLTLVYGLFEWIVTGDGKTSYWLFQHGVLACILGLFYYFMCCMLCKADENEKRRVI
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