Scaffold Ga0209599_10000807

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000807
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17714
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008243	Metagenome / Metatranscriptome	336	Y
F017302	Metagenome / Metatranscriptome	241	Y
F034930	Metagenome / Metatranscriptome	173	Y
F062753	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000080720	F034930	AGGA	MKNFTVKENAAFRLRVKSWKCLTPSDLNSIEFIQESLKDGDVIDTSTYNFFMTDEELKTLAQGLVA
Ga0209599_100008076	F008243	AGGA	MHPLEQEIQNISEQCQAGNISLDERNYLLQEIRDIRAAQECAGNEVAFRYIVQACNIAMAVV
Ga0209599_100008077	F062753	AGTAGG	MKHLLLVAVIALSGCSTIKEYWPRPHDPVMFNQLVAVDLAVEKQNCEKPTWTELHPITEQLAKYSEWRHDPQATNLRGLEKHVERMSKGGSKTFCEIGKKTAKQRIDAAKSAWEGR
Ga0209599_100008079	F017302	N/A	MKIALIIASVLLVGCATNPEVQKSISKDQTMDKMAKAALINEMLTSPDPHVRAKGAAIAEKFLIEPKKNIFGF