Scaffold Ga0209599_10000736

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000736
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19080
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (6.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005090	Metagenome / Metatranscriptome	412	N
F005879	Metagenome / Metatranscriptome	387	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011392	Metagenome / Metatranscriptome	291	Y
F011935	Metagenome / Metatranscriptome	285	Y
F024788	Metagenome / Metatranscriptome	204	Y
F028510	Metagenome	191	Y
F029655	Metagenome	187	Y
F047046	Metagenome / Metatranscriptome	150	Y
F047672	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100007361	F010836	N/A	MATSNFHNVNASAIFAVQLENDFDYEDLVDNLKSELNNDSDYVDYGKADHNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLPKSKATQYAKLAEKKAEKLKNQIVEKLESLYNDYSEKYGVTAVFSNGETIYHKL
Ga0209599_1000073615	F011392	N/A	MNLSIKELNELIYSLGIASHNGRFVNKDVNESLLERLYSELNSKIAEEAIDEEVESSTYYVTNEEADEDAIQRNYSAFSDYASTLQQDSDRYESSVSKDYDNHLAKLKERGYITQALLDYVDRKGAVSHGELETYYKQITGGSNSFSHILQSLRTPYKNRKTQRYVAKEGKRYTDALYVIKVANPYNWVVA
Ga0209599_1000073616	F005090	N/A	MKKKMKFVWCGVTFELPAECLRTTDYWGKPLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENRAPHGSWPSAIKTLRGLIAGEYVFGPLSIEKAIEKAKSYGYSESTINKVLELV
Ga0209599_1000073618	F047672	N/A	MFTKVKYIVTQNKELIVFGELMQHKEFAHFNPISAGFISFGINKDGNPSCSCYGESISLGIKSNPEYDTILAKRQLNMIDNY
Ga0209599_100007362	F047046	N/A	MNKIEELKSVIGKDVSENRSPTCRAKLIKVNKKTCTFEVVKSPYRSGDESRIGERYLVPISWAWNAFFF
Ga0209599_1000073628	F028510	N/A	MKNVLKQRTYECKCGALTKEYVWDNDLDKTKINCSDCSKTLTNKNLVSNTPNWAASIRTPTKNR
Ga0209599_1000073632	F024788	N/A	MSLDEKTMKLNEQRFATIVILCNVLDTEEGVTDHIKSAICASLINMLERSMNADDTGLVNLINNSIDNFCAKVEEERGIENYRDTLSETVQLAKRLVDELNTKARRIKEGEDILKGICLN
Ga0209599_1000073639	F029655	N/A	MNKLVFKVNENNCINFLKKYPVVMHLMVQSKGKNLLSAYRNFLKLKDMNESKLGGRAECVGSVSFGTKTFYKYDWDACTGWAEVFEFVYNKNFK
Ga0209599_1000073642	F011935	N/A	MHDLHSHKILTMVKSIENFDKVYGEQIYPADGMVYTIEKANIVKTSGDPELLFYFEVKLLDMYNNHRPGKYQIAIFADHKNQHNIASVYRTGEQAALFMDKFVSSVHFKNKEFFKTYVVTLINQALNH
Ga0209599_100007366	F005879	N/A	MFNEEVFWKDGFEGECKGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFDDNNLEIIIKPKN