NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000736

Scaffold Ga0209599_10000736


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000736 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19080
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (6.38%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005090Metagenome / Metatranscriptome412N
F005879Metagenome / Metatranscriptome387Y
F010836Metagenome / Metatranscriptome298Y
F011392Metagenome / Metatranscriptome291Y
F011935Metagenome / Metatranscriptome285Y
F024788Metagenome / Metatranscriptome204Y
F028510Metagenome191Y
F029655Metagenome187Y
F047046Metagenome / Metatranscriptome150Y
F047672Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100007361F010836N/AMATSNFHNVNASAIFAVQLENDFDYEDLVDNLKSELNNDSDYVDYGKADHNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLPKSKATQYAKLAEKKAEKLKNQIVEKLESLYNDYSEKYGVTAVFSNGETIYHKL
Ga0209599_1000073615F011392N/AMNLSIKELNELIYSLGIASHNGRFVNKDVNESLLERLYSELNSKIAEEAIDEEVESSTYYVTNEEADEDAIQRNYSAFSDYASTLQQDSDRYESSVSKDYDNHLAKLKERGYITQALLDYVDRKGAVSHGELETYYKQITGGSNSFSHILQSLRTPYKNRKTQRYVAKEGKRYTDALYVIKVANPYNWVVA
Ga0209599_1000073616F005090N/AMKKKMKFVWCGVTFELPAECLRTTDYWGKPLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENRAPHGSWPSAIKTLRGLIAGEYVFGPLSIEKAIEKAKSYGYSESTINKVLELV
Ga0209599_1000073618F047672N/AMFTKVKYIVTQNKELIVFGELMQHKEFAHFNPISAGFISFGINKDGNPSCSCYGESISLGIKSNPEYDTILAKRQLNMIDNY
Ga0209599_100007362F047046N/AMNKIEELKSVIGKDVSENRSPTCRAKLIKVNKKTCTFEVVKSPYRSGDESRIGERYLVPISWAWNAFFF
Ga0209599_1000073628F028510N/AMKNVLKQRTYECKCGALTKEYVWDNDLDKTKINCSDCSKTLTNKNLVSNTPNWAASIRTPTKNR
Ga0209599_1000073632F024788N/AMSLDEKTMKLNEQRFATIVILCNVLDTEEGVTDHIKSAICASLINMLERSMNADDTGLVNLINNSIDNFCAKVEEERGIENYRDTLSETVQLAKRLVDELNTKARRIKEGEDILKGICLN
Ga0209599_1000073639F029655N/AMNKLVFKVNENNCINFLKKYPVVMHLMVQSKGKNLLSAYRNFLKLKDMNESKLGGRAECVGSVSFGTKTFYKYDWDACTGWAEVFEFVYNKNFK
Ga0209599_1000073642F011935N/AMHDLHSHKILTMVKSIENFDKVYGEQIYPADGMVYTIEKANIVKTSGDPELLFYFEVKLLDMYNNHRPGKYQIAIFADHKNQHNIASVYRTGEQAALFMDKFVSSVHFKNKEFFKTYVVTLINQALNH
Ga0209599_100007366F005879N/AMFNEEVFWKDGFEGECKGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFDDNNLEIIIKPKN

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