Scaffold Ga0209599_10000637

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000637
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21368
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (73.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F023064	Metagenome	211	Y
F035226	Metagenome	172	Y
F086832	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000063718	F023064	GGAG	MNADELIDNIKFIADKQYEGEPARNRLAYHVGLLESHLRTHINLVETAQEYIKELEMRLIAKESE
Ga0209599_1000063723	F035226	GGAG	MSFKNQLNEKKDPIDDVQRLMCSVPGCPKRWSVHMEGMRPMCSEHQWSDRKPTTRRDIAALLPSTKPVKHWMDDEAF
Ga0209599_1000063725	F086832	AGG	MDKTSAELQLTMRFSLQEMRQSEAREWILRYNQKIKELGKAKASAWWQTTIADISKRRGEAAANDLRNRMNQERSK
Ga0209599_100006376	F000961	N/A	MMADIDLVKYGVLWQKVEDYERRFDDMDKKMSKMEGQLEQLVALANQGRGGFWAGMALVSAISSAMGYVSHWIGKSN