Scaffold Ga0209599_10000531

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000531
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24060
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (90.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F005701	Metagenome / Metatranscriptome	392	Y
F009397	Metagenome / Metatranscriptome	318	Y
F009599	Metagenome / Metatranscriptome	315	Y
F010749	Metagenome / Metatranscriptome	299	Y
F015332	Metagenome / Metatranscriptome	255	Y
F032651	Metagenome / Metatranscriptome	179	Y
F093244	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000053123	F015332	GGAG	MFTADQVWGLAVAADRINGGYVKDDVVVYEGECRKVIKQANKLMVKGWLRTESFSEATEADIERGREVRHFFNGFLLKQLSGKINDFEQQALKIAQMDEFTGRNLLEFAIVSCLPAAMRHEQDRKELTSDIRNSTQLQGNVGDKIMGEIEVVKSYYSKDYDKYRVTAKLVDSFVDFWYNSNLEAGSKISIKAKIKSVRGDKTTQLNFVKRA
Ga0209599_1000053137	F002052	GGAG	MARTLTFQFEVTCAGNGQADEARVEEMIDLSMQDLVYDDEFITALDEKESVTIRVQRIG
Ga0209599_1000053140	F005701	AGGA	MLTNCIAYVKLVKNNKLNTYKAQFAFNVHKRIVGEKLKYAFPTQAKCNYVSGDLLADNLQEELERVVAFAQQTLRTTNIQIVE
Ga0209599_1000053143	F032651	AGGAG	MQVEVVNIEDAGFYKDAYTSGNCVKVTLQRGKAVATCEQILIWDEEYAEDCFEEWMECALAGEAGYTYTEETV
Ga0209599_1000053150	F010749	AGG	MKKFTYWRNAIVSELYVVEAETEEAALEQLNNGEVEMFSSEWMDWDTDRYELEHIEEMDPLYRMVKDYKQEA
Ga0209599_1000053153	F093244	AGGA	MKSNAAMFVFITGLLVTFGAVGGIEQSITDTDMLTSMVVAIVGLLVMYCGVLALKGAAYY
Ga0209599_1000053154	F009599	AGG	MIKLEGLSKQDIQICNLLWNCDTLEAVDQMVAAMPPAYKSRAVVMRELMTAAQLDTVENIHEDIPALLQRIASR
Ga0209599_1000053158	F009397	GGA	MTQYLLAKARSTTGQTVKNQDLTGARFTLAQRAIAQETADQLAVKMTARTGDSWTGFVESYTPSVRRTS