Scaffold Ga0209599_10000456

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000456
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26758
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000045611	F000258	GGAGG	VTANYKLDAMIELRKYLWKELHTRNIFDQDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVSDINEIRNYMTDEFRRMDESARDINKWADLSDKFKFHTVWVADISPTAPSEEIQGFFSAEVILEIKYSRITDGQGRFL
Ga0209599_1000045612	F001900	GGAG	LDNSALLVQTASGLERMMYSNQNGPLKDSTVAQISAYVYYEASVISKLTTNKKFQNAFTSLIFQQIDQDFGAYIDALARTRPKSLHHVYEWKRTGSKSDRLFKLNKISEQGLSFRVNYEFLPSRSMVPAPKGKRRHMFANKAAVMEAGLPLVIRPKNAERLVFEYNGETVFMPKGASVTVKRPGGSAARNQFSLAHSRFFSGRLVNESIKKSGFQKIFNSSMTKALSVPSDIKKVQYSFSPNTIKSQADSALSLAFGGVM
Ga0209599_1000045613	F001229	GAG	MNDIVDSVLSMKLDVYRQFEGQDPDTGAIIREWTYYKTIPCHAKGVISNSATTRSSDKQVFSNKYINDQIIQVRTSEKLTAREKVTNIRDVDDNVIWQEINYPNESPTVFEVIGTTPVTDPFSRVIAYNSSMKRSENQQIGQ
Ga0209599_1000045614	F005054	N/A	MAEIFINSQSPIKHQVFWNGEVAVADSAPSVKLFDVTDDPAITPPINPGQLVAVLSSVADEVNPGSYIVNIPYAQTQRNKTLRLQWEYYVNGTAVTKSDDVFVVTPYVNFNHIQDMGFSMDSSDPGYKSYQELVRAEKYARKQIEDYTQQKFYLHDDVYVVYGYGSDILPLPEKIYQLHELYMNDTLLLNTIDEIDNWNYDVIISESGYGIRINRATALDNTVYTANGMIPPSIYDVNGVFQSNTPYRIQGRFGWEKVPDNVELAAIELMKDFFAKDLLWRTKYIKKISTFDWDFEYNGEAYSGTGNSYADKLLADYVLGTKVEII
Ga0209599_100004566	F005053	GGAGG	MSMYLPRGSVLSIEAKDILATPAGTTKIWNKVTEHNRSDLSVSIERIEQSIRTSNGTLRKNHIADKRRFSMSWSMLPSYRTLTVDGAWGAEDLRQFYLSEDGKKEFNIKINLASNGADQSSSGFEPYTVVFGGCNFSVVKRGLQPHWNVSIELEEV
Ga0209599_100004568	F005479	AGAAG	MPELINTLKSLKRKEHEDKKFAASLKGVDIGEYQDDKKGGPSFQDIELRAAGIDAASNDVVSLQGNFAAQAGFGIGAGLGYTRE