Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000422 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000422 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28129
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (25.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28129

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (25.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010084	Metagenome	308	Y
F019827	Metagenome / Metatranscriptome	227	Y
F023849	Metagenome / Metatranscriptome	208	Y
F028170	Metagenome / Metatranscriptome	192	Y
F045558	Metagenome / Metatranscriptome	152	Y
F058148	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100004222	F010084	GGA	MDITEEVITHLKNNIKTKIGVSSIDGVGVIAIRDIKQYEEVFPLWDYETGIYIIPIDRLSEIPNEVVELLDMYFINDECGYKVIRLFKGLNFLFHGYSYCNSAWPNENNVNITNNGIAMRDIKVGEEILEWYNENIN
Ga0209599_1000042224	F058148	N/A	MELLDVSGMSVYEYCNFVESRALHLGISSFELNMEYYFDRDLISDSMYERAKAELLERRS
Ga0209599_1000042240	F023849	N/A	MKNFNLHTNNSQSALRNEWCGIRMFSTISNPAQLELGKVDYISTQLEDDTDVG
Ga0209599_1000042264	F028170	N/A	MALKKLMKGLQASLEKEMVIHPKTKLGMWIHNFKMNRIECRINDIKKELSNRKTKK
Ga0209599_100004227	F045558	N/A	MIPIIRVSDKMEGYAFLVIDYSQEHNLLFTCAMDDGEIWTLSNHDIRFCKNVSLDRSEVK
Ga0209599_1000042273	F019827	N/A	MIANILRGTKRKEYSSSKVRKMRSDRMLTKAKKDGVSNDQVQFYLGKLQAAGHMRLSGMSSFDAKIDADVFSEGRAMKTTTIKFNTIIEKGMGEKPHMTGYLTSASDSDKQYKLKGWFNEDGTFRIELVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000422

Overview

Ecosystem & Geography

Associated Families

Sequences