Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000294 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000294 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35280
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

35280

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (81.25%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026252	Metagenome / Metatranscriptome	198	Y
F043934	Metagenome	155	N
F091944	Metagenome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000029432	F026252	AGAAGG	MKVLMSGFTALQINTEKRTIQKIDVPASIAKALREAGHDVDWRKITPGEDLSGYDVLWINLAPLNSLNGRQGAMGALYALSSGIPCVGFFDDWQFNTVFNGARALIRKPAMLYKHLLVGTEHRGEEGATYFSRADIEAALERVRELNPAAAKKCYIERYYMMDTDENVQPYEKRLVEAARDLLADRWTAGMVPVCPMYSFGDRAIVRKRMPDEVGPIEALDPTSTVVPTLQPITALAPEHKKKAWVLGALMPHDTWLEKKNPDWPVEIVGSRKLIKKLGGQRFDTEQDVLEFYNHHWGILSPPYPHAGSGWWRSRFLYAAHVGSILVTDKGEGDPLGDAYKLKITDVEKMTDAELHETAMAQRAALAPYLPE
Ga0209599_100002944	F091944	AGGA	MAFTGIFEAPKAKPSAFGLFVVAKPENGPDEDQWVRGFSQEWETEVSNLVNFDDTDTTYDVVGTRTDLVRHRLIKPFFIEMTEDISTFGFLGLDRNARITRQIEAGSQKAIEQELWDGYIRKNETHENLALSDANATILGGGSAYSAKRALAILEQGIAEASQFGEQGIIHMTRDVAALLSSNSQMLFHEKGKEHLQTLAGTPVVVGSGYSGTGPDDAAGSTETPSDTNKWMYATGLVKVFLGKPDVVADNLAQSYDVAGNQNDMRIKAIRPAAVYFDPSIHLAVRVDLTA
Ga0209599_100002947	F043934	AGGAG	MPIVDISTVDSRALHLKDFLDAVLAKVIATYDEYNVDLPSRRFWLMGEPAIDCEQLSVSFIQMYLGLPGDQASQPQRCTQPRTAVLSIAVSRQIPVVGNNGKAPTGEKIQEGSEIAAVDCYLFMELIRRLDQWEENEYGMGVIATVEAGNPEGGFETVRMQVSMVVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000294

Overview

Ecosystem & Geography

Associated Families

Sequences