Scaffold Ga0209599_10000225

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000225
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39857
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (78.89%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F004475	Metagenome / Metatranscriptome	436	Y
F004840	Metagenome / Metatranscriptome	421	Y
F011386	Metagenome / Metatranscriptome	291	Y
F017131	Metagenome	242	Y
F017301	Metagenome / Metatranscriptome	241	Y
F021757	Metagenome	217	Y
F045752	Metagenome / Metatranscriptome	152	Y
F045756	Metagenome	152	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000022513	F045752	AGGA	MADPNQTPSRGDWVCPCSGCQKTVAAERKQLIDLFEKTKNDYLVYRGSSFNKDGTLFWAKDDAMAFAEGIDTVIELIKERMPKPKPKRQ
Ga0209599_1000022521	F004475	GAGG	MSNWTDELTDEQKQQVWDFIVFTVKEIREQIAVDILATSDLWAAKGLNKSRRTQKAFKISAAIARGQNEVDANQSN
Ga0209599_100002253	F017301	AGGAGG	MNKKTQALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVALRAINPNDKAFGVLPDVEVVEKALKSAKAPVKKKAVAKKAAPKK
Ga0209599_1000022549	F001507	N/A	MTTPYKPYAIHELITAIYEDNYSHFDFMDNMNGGDCDCNLHQTMNVIAMYEEGLVPDND
Ga0209599_1000022556	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPNKKKYDRKKCQSQMLELRKERRSIND
Ga0209599_1000022560	F004840	N/A	MYHQHTMSFLREGAILMDYEYVITSAYDGEAPHWTQRYEKEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGTVKVVA
Ga0209599_1000022563	F021757	AGG	MTRKDYVAVAEILSDFKPLIADQFTFEDLVDEFADMFSADNPNFKLDKFREACNK
Ga0209599_1000022571	F045756	AGGA	MTKYNVLISYVVEAEDEMRAVFALNKSLYPLSEDEIAKFDAFHIEEVQ
Ga0209599_1000022576	F095473	GAG	MNCKVINCESTELVYSGTDAFMLGIPTETYCYKCANAYAQIDRVMSKVREDYLASVSTSTTSC
Ga0209599_1000022577	F011386	AGGAG	MKITLTSMQGNTRNIELATKQEVYDFIELFKSTLLPNQRMKVTCDLLGIDGYLQGVNKI
Ga0209599_1000022587	F017131	AGGAGG	MAFPSTYNFNYYRGDTAEFVARPKNANNGSNFDLTDYDASFTIANQRGALGTQYDADAVVNETTDIVTCTITPTLGRELEAGTYVYDVQIDNGVQIYTLLTGTITVTDDITGAV