Scaffold Ga0209599_10000219

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000219
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40778
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (86.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002130	Metagenome / Metatranscriptome	591	Y
F002689	Metagenome / Metatranscriptome	536	Y
F002997	Metagenome / Metatranscriptome	514	Y
F011148	Metagenome / Metatranscriptome	294	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000021910	F002085	AGGCGG	MNVIAPVAGTNNIRIADFIRINSGVQTFRFCTAASDITVPAVDATAFNAVGTLIKVGDVQRDIKSTSNDTSVVLTGIDTAMLGYVLSNTVKGSYIQMWHGFFDTNGALITTGGTGGLYQFFSGYITSYSIQENWMEESRSFVGTIQIGASSTQLTLQNTNAGRYTNDDSWQFFNSGDTSMNRVSFIETINYQFGKRE
Ga0209599_1000021911	F000934	GAG	MSLNTILSNAESVTINDQRFVGQTVSRNQKILTSEIITVVPFQFTMRPMNYLLYSQSRGILNALRIPDKALEQYLNFGSTGWLNYIKYQADMTPAQIAACQWQTSSANKTLVLGSLPSISAALYLFRIGDFVQVGRYAYIVTADVQRGAGATVNVPVHRNLITALTSTVACVAGQYGTTVSLGGSTYTGVTFPVILRDYPTYTLKPMTNDSFIEWSGEFSAFEAVL
Ga0209599_1000021921	F002997	N/A	MTIARFENVTINQLTFGANGFGEQTTTEVEWFKTRARVHSVSNHVRISEKYRVYADVVEFTFNYTPNTREIVDNQNLYAVVWKSFSWRIDSVRETDDRMAVKMLCVRNDPQTAV
Ga0209599_100002194	F011148	GGA	MAVFNKNSLTQVSGFDNPIIAGELVWQQKTFWNLALTGDDNVTPVDLNGATIDAQIVRRTLSNVKDTRYGLSFDIADYTPTPTAVPLTILNRVNAAGTFTLVIDDTSWGLIASDPEMSIDSVNGAGFSGRIKISFPASGVTIPAEDNIIFLFFIVRSDAIVKL
Ga0209599_100002195	F000324	GGAG	VKTVTPCFTVTQDGTTLNVYHANKGEGLPKHEHVFSHLTMCHSGSCLVRNERRSLLMTKDTQPVNLVANEWHEIEALEDGTVFVNVFAENKY
Ga0209599_1000021965	F002130	N/A	MSEDKLNANTTLDKVLGYVDSPFKLFAILVMGVVAFAGYFLWQNQEFMRDAYKESKKLPEINVSRADETAAMLFKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSSNNNDVIALMTNQIPCSEYRYAQSEVGLWYLDKGVTYTCRVSVPPDSHRFVGQVTVGWSEPPQNLEQIKFMLEIASAMLTKRGN
Ga0209599_1000021967	F002689	GAGG	MATINATEARLDTHEEVCAMRYEQINARLKRLEGIIIKASGVMLVGMAGVIWASVMPHLA