Scaffold Ga0209599_10000076

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000076
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71313
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (71.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018539	Metagenome	234	Y
F040103	Metagenome / Metatranscriptome	162	Y
F064710	Metagenome	128	Y
F096611	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000007635	F064710	AGGAG	MSETTKEKLTSLMLQMQDIIMEDYEDNVDIQDAFNALASAYDYYIED
Ga0209599_1000007636	F018539	AGGAG	MSKAVYTANTAKAKIIYYKDKETYKIIFAFNVHIKEKDNGDIVHIFPTQKQCAYVSGDISYETLQADKERIIAQAKKTMRTDYVEFV
Ga0209599_1000007663	F096611	N/A	MRAFEFITEKTDPKVCRSPKRLGRSDHNSCVSQGLRPHQSKGKGHTDGHGNYLKGRKAKSVQYGGAVKDYDGKS
Ga0209599_1000007692	F040103	AGGA	MKNFLNTLYEICLSIGQARAASILARQGKIEEAKAIYGN