Scaffold Ga0209599_10000060

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000060
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81005
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (32.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040474	Metagenome	161	Y
F046175	Metagenome	151	N
F070992	Metagenome	122	Y
F102548	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000006023	F046175	N/A	MRRIESNLIERKHELIQASSWLMNLVILVITIVGFGLFLYSQYQTTSTTEEPKRIPFEPVPWLSATRNVRMEEYGRQLQPREAQIGYGIPQSIGGDGFSSVYGDYTTRASRD
Ga0209599_1000006033	F070992	N/A	MDYFLTLEHWTSIVRKIKDEELEYDVSAYKTGQLAKEILSFIRSSRFRQALLFREKRGEEYERFVEKLNLIYDPEAVKRILDNDEFWEACFSLRSS
Ga0209599_1000006050	F102548	N/A	MYKNWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGLIYMLLALVVAVAMK
Ga0209599_1000006072	F040474	N/A	MYFLFEAVIVGLLLLPIFWVTEKAGFSKWVTVFIAGALFHITAELTGINKAYVLTKL