Scaffold Ga0209599_10000056

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000056
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81855
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (86.46%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001106	Metagenome / Metatranscriptome	776	Y
F008131	Metagenome / Metatranscriptome	338	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000005637	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPEDTVLVRMTRENFRYDIQGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA
Ga0209599_1000005639	F056615	N/A	MYDLVESILTMFMDVYKPVDSQDPDTGSIKKEWQYDRTVSCSAKGNISNSASTITKDGQVFSNKYRNEEMLQIRTSEQVTLREKITNIRDYENNVIWEELNFPTNTPTVFEVVGITPMTDPFGGIVGYNSTVKRSENQTIGQ
Ga0209599_1000005640	F035307	GGA	LDNSTLLVTAASGLQKGMSGTSGTILKDSTVAQISAAVYYHAQVVSKLTTSKAFEKKFQSVIFKQIDQDFGLYVDSQSRINPKSLHHVYEWNKVGNKGSRLFKLSVLSTDGLSFKISSSFLPSKSAVPNEFGSRKHVFISKASVMEAGMPLVIRPRFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFRIAYAQFFTGNLVNSSIKKSGFQQIFNSSLTKAMRVPGDVRKVKYSFSPNTLKMQADSALELAFGGAS
Ga0209599_1000005641	F000258	GGAGG	MTDYKADVMIDLRKFLWSQLKSNNIFEQTDYYSDNIGEEIIPIIPVQQSPELNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDANAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHIDTAGRFL
Ga0209599_1000005644	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDSEPQAKTFDDVKRKALGIEASGDDIVSLQGSLAAQAGFGIGAGLGYTKE
Ga0209599_100000566	F008131	GGAG	MSVQRLVPLHAVALATDPANPRIGDIYFNTAESSLKYYDGSSWSPVGGAITGLLDHIHTYDGAVYSVESVEVPSPGVVDGGAA
Ga0209599_1000005680	F000369	GAG	LSQHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLAVKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVKILKEATATCPKCKMEVAKRLSQITGVIESVPVEEADVV
Ga0209599_1000005682	F000376	AGGA	MSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVIEYKRIWKLAGHRPMGNIRKHFSEYVQQIVESTIDKNEDGTL