Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000035 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000035 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99354
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	114 (65.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

99354

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

114 (65.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014494	Metagenome / Metatranscriptome	262	Y
F036693	Metagenome / Metatranscriptome	169	Y
F039621	Metagenome / Metatranscriptome	163	Y
F047646	Metagenome / Metatranscriptome	149	Y
F071976	Metagenome / Metatranscriptome	121	Y
F073096	Metagenome / Metatranscriptome	120	Y
F083937	Metagenome / Metatranscriptome	112	Y
F095137	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000035137	F039621	AGG	MKYLIIFAIALAFIILIPCATIWSLNALFPALAIPLTFDTWCAALVLGGVVGGSTGFSFRKKD
Ga0209599_10000035140	F036693	N/A	MYNKLKPRDPIAKDLRTPKYRMRVVESKVKYTRKSKHTKDNYGQYL
Ga0209599_10000035155	F014494	AGG	MTTKHFECEECGANGKILLKGTDHQLEDIVYCPVCSADIYEEEDLDLED
Ga0209599_10000035174	F047646	GGAG	MILEQLREVAGVGGPAAQLANELLVLTDKKAIGELNQEEFEYLVREIADVRAQQDLSNDEIACRWIVAAAQAVLAVV
Ga0209599_10000035175	F073096	N/A	FLSGCSVILPIKHDPAMFDNLVQVKVAVDKLKCDNKDWTDAQNKITHLKVYTEMRKDPQANSVSQLGEAIEKAKQSNNKTFCESLLRINKTRIDVITDAWRGR
Ga0209599_1000003531	F083937	GAG	MGKTYLKNQKSYEEQSSGRSGKHANHTSGKKTGGMKTLNSYVEEDYEDPFQDDFGIEDSISIQHTKDDTTNTP
Ga0209599_1000003538	F071976	AGGAG	MKYRVIVNGVSFYTTGAAIKRGVGDSVSVNTVVRQLFENLFNAVGIASTMTVYDNKMNRVKYDVQISKV
Ga0209599_1000003564	F095137	N/A	MPQKRQRKYPEKQCPTCSKTFAKQGKYCSRACGNSRVFTTTAKAQMSNKIRQKINDDPEYKDKITSHIHPDIPIPPQQESPLGLNQFIAGGDLWTEID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000035

Overview

Ecosystem & Geography

Associated Families

Sequences