Scaffold Ga0209599_10000002

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000002
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 299582
• Total Scaffold Genes: 387
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 277 (71.58%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F006506	Metagenome / Metatranscriptome	371	Y
F008493	Metagenome / Metatranscriptome	332	Y
F010472	Metagenome	303	Y
F010760	Metagenome / Metatranscriptome	299	Y
F028806	Metagenome	190	Y
F031871	Metagenome / Metatranscriptome	181	Y
F032651	Metagenome / Metatranscriptome	179	Y
F036696	Metagenome	169	Y
F040103	Metagenome / Metatranscriptome	162	Y
F074374	Metagenome	119	Y
F076859	Metagenome / Metatranscriptome	117	Y
F089784	Metagenome / Metatranscriptome	108	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000002145	F074374	AGG	MSKNIGATLAPFDPSIGLPDKRVPITDVAKACSRRIGIKIPAQMTAIAKSVKNTLKFAWVPADKIYINYERQRWPEPKHMKKLHGKWDINCVTPLQCRYDPKEDRYYGSDGQQHMTVWLIYYGLLTEIPCFYVETEDVNVESRQLLALNTDSEPMAKFFIHKQNCKMGDKASLAIEKAVTDANCETAYKKRAPGCITHISHLYECSESYGNGPLTYVLARYREYWPNDKIAEPTVMGFLKAREILIAEDAYSDSVFKDLFYEASQRFETGKDLHLSINHAFERTYPTNYKGMGVREKQASGIIAIYEQAKGKSLASKPFDITIPIMKVEDTEEDDE
Ga0209599_10000002213	F040103	AGGA	MKNILDTLYSICIGIGKVRAASAMARAGMHEEAKAIMLAK
Ga0209599_10000002225	F010472	AGGA	MGHGNILHEVMTSGHSWAAERAQMALQVSEAVQNGQMSSDEAKEILADLISTDKLDQEATDQQVRAALVFGVTQLASFV
Ga0209599_10000002226	F006506	AGG	MKRLVTLLVVLALTGCANIMELIPSRWDVNQAKVITDLQQQTRNFDCKADQATQVNSIAKNVEWFDIYSQTKPTRDIAKLTKTVNATVKEYQERLAKGPVSPLYCDLKKKIIQQQVDIIAGSVQGRF
Ga0209599_10000002237	F028806	N/A	MDKYKDFPEQPKTMSEAEGEALFQNMLKQIAKFKPDEIIAVNRSGFSYAMWVAQILKLPLGAYWPKDGKLIAQDTSKRLVFVDDNILQGTTFLDTKQFMDGYQHEWRWAVLFSDWHTPEAVRNEIIQGARLPYFAEEPMWGSRKVSADYGVRYRDE
Ga0209599_10000002262	F008493	N/A	VRVLLDKRADLRYNYDMMMTKTRRTPRKDSSYVIYEMTSELGDSYIGLTRKGTVTPVKAVLERWRKHKSRARNEDRRWALYVYLKTGGLDLGWTHTIIAIVRGRAEAYAYERELVKMAEPTLNDQYL
Ga0209599_10000002263	F031871	GGAG	MKTDHTMYIYKADRRKKSGERLVSTTVWRNRDAAEMAREVRELQYELYPTSKGFRIEFVATMKTVINLMSGKEVQIPHDTPRSCDPSSELYWSM
Ga0209599_10000002270	F099274	N/A	VLYYTLDTKEIAMAMVEGKRVQVGDTVSFKCDIEQCGTIYKIEGDRLFLESKYGFQGDYIGGQEKTIQSARDCWIEG
Ga0209599_10000002271	F010760	AGGAG	MLNVDKIVKVYNGRMGCMCGCNGKYSYTADGAVNHGPGYDVTASVNERSVRIMAKKILANPNVEFEDNYAFVEDRARNKMQVVYFKENQ
Ga0209599_10000002284	F032651	AGGAG	MQKVTVVDIAADGFYASEHMSGSCVKVTLQRGTETVTCGQILIWDEEYAEDCFEEWRDCALAGEEGYTYTA
Ga0209599_10000002285	F004924	AGGAG	MRDAILAKLAEVDDMLQAATLDGDKLTEMECFAELEGALHKLTEAVDYYVD
Ga0209599_10000002287	F036696	AGGAG	MSKALNKRISKAFDAIYSKGDNGLDYMDRHCEMDADLMQFFYDDAVDTLSKADKQRMADMLETVVADMAFDLV
Ga0209599_10000002351	F089784	N/A	VAINKPKENSMTIQLPYELLWGVDVAIKKLRPDANFQLEGTRFTQWTCPHGSEAPTWEEVMDQLRADEESANKWLSENANN
Ga0209599_1000000249	F076859	GAGG	MARKFDIKRSMNKDLVYGGLLELSKNKLVWHESTVSPEYSHLTEDGKTAIIHIVENMFRGLQIIHQQEIKEEAKRQTLEALK