Scaffold Ga0209599_10000001

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000001
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 371055
• Total Scaffold Genes: 467
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 338 (72.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F002869	Metagenome / Metatranscriptome	524	Y
F007163	Metagenome / Metatranscriptome	356	Y
F039034	Metagenome	164	Y
F048947	Metagenome	147	Y
F103236	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000001343	F001443	N/A	MPMYEAVVRTPEGEKKQRVWAPDMKTARHLLEQEYGIKNVPYQPKIVPN
Ga0209599_10000001361	F103236	N/A	MIYINVGLSNPWGRPFANLWNRSGLITDHLAWEAELLQTRTLIGFEFSYTRRQSHAGLTLELAVFGHSISFQIYDTRHWNHVTGAWEVHL
Ga0209599_10000001373	F048947	N/A	MNSAQTRRHRRAFRQLEHSVLIDAKKHRDAGAWCQQQFGKRWEAIGKNTDGAWCMFWAGRDNHDKYIFHFVEERDKLIFTLKWL
Ga0209599_10000001395	F002869	GAGG	MTNEITTEMLDRKIAWCEQNAFWGRGSDVQRMQDFYFEKTRTSVTEDWPEAFTLQELADTLGIEQVRYRIYYSQDNLTCRLFVFRPRCTYSEEQKMLAMGFVPAKDGDTENIPDHPVEEVNNE
Ga0209599_10000001396	F007163	GAGG	MTLEDLQHIFDRQIEEGTEKLYFMLVDGAAMPEILRHPAEDLEKLLPMLSSFQYVGSPAGIPRFTK
Ga0209599_1000000174	F039034	AGGAG	MKEKELDTQSAGYYAYAAARDARMRATAMWSHYTDAERVRAERMKLGLELCYSAKGIYINPRTKFIAIKIDKPTVRDRKNLALLEQDYEAQGITKVLTNQGVTYRIAKV