Scaffold Ga0209188_1101754

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1101754
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1152
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_11017541	F030663	AGGA	MYQLIFTFLVTTQAGIPGFHIERMSQFRELEDCEKTRASMVAYMDRLVRENKMFPGVFECQKVQR
Ga0209188_11017542	F044299	GGA	MNLISQYLMSIDRPPYVDGRRVGQATPCLSYGKPSWFISFLDGYTHTNNPVFTDEDGLNGAPTVREYATNLGYEPCTN
Ga0209188_11017543	F089835	AGGA	MRLSPLDERMNADIDALIAKLQEAKTSRTYLQRASLVGRVAEQCQSYEFYWEEKLYSLMD