NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1101754

Scaffold Ga0209188_1101754


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1101754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1152
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030663Metagenome / Metatranscriptome184Y
F044299Metagenome154Y
F089835Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_11017541F030663AGGAMYQLIFTFLVTTQAGIPGFHIERMSQFRELEDCEKTRASMVAYMDRLVRENKMFPGVFECQKVQR
Ga0209188_11017542F044299GGAMNLISQYLMSIDRPPYVDGRRVGQATPCLSYGKPSWFISFLDGYTHTNNPVFTDEDGLNGAPTVREYATNLGYEPCTN
Ga0209188_11017543F089835AGGAMRLSPLDERMNADIDALIAKLQEAKTSRTYLQRASLVGRVAEQCQSYEFYWEEKLYSLMD

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