Scaffold Ga0209188_1026177

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1026177
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2871
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F075600	Metagenome / Metatranscriptome	118	Y
F083897	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10261771	F001937	GGAG	LSPDTATIVYSYFFVGITILAGFSIVARHTISKYTEELKDKLNRIEYALYNDGKTGLINKVEELLENQQSIKIDVEVMKAKAEL
Ga0209188_10261774	F075600	AGG	MEKETTIAHRSFSSFTSWLRCGKAWQLERDLQAPSDPAWWFVGGSAFHSAAEKYLLRQFELSKDTSKTVEVPF
Ga0209188_10261775	F083897	N/A	MSKDIANLKPTKGQEGDYRSLGPIRVCPCGSDLWNVKCKFDDDGELGIYFLDMRCALCDSLAIAPIPNLGRDC