Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1023624 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1023624 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3077
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3077

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F064395	Metagenome	128	Y
F070853	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10236241	F070853	N/A	DRGILSDYSHGYFCTDSRRGGMTWWGRVDSNGKRCMMPIHHGMRVDCETMKPTKPITIIGKKVDRKVGKTLLAQYQDFYKTTEVMTKAMDYEVFVRTTVEVVKEYFGEDVSQTAWHWQTCKQKADAIVDSAPLDAAILYIMGWDIGSMRWNLRRFMDTQYGRYSAHEDTPHDMFLNLKRRLNKEIYKANSQVFKSVEYSSGEVYPPSEWGYTIIVDGVEVKQYD
Ga0209188_10236243	F042160	AGGAG	MISRYFLDGFGSDDELNELLASTTLPLVRELQFKYGLKVMGKVQNVPYPKEDEKAYMMCYPNGLAVCKVWTTNLGGADADQLEYCFRSHYYAKSRGQDQSARETVRSTKLSSLMTVLKRQDAVRSKKELLDSKVKITKNGLHNLRRAQGNHDKPTTFTADEIHAMLLTILGESTDGFPVALDLNKCKNTLDIYKAADKIRDVKIEESKRFFKNPFYLIGIDDYKHLLIGKFKMTVLHSDEKKMEYEVIEDFKRVKSAEDYPELLPLLTMMKVSYESKEVHKLGALNFPLMDKYDEGLDAVFFYNSRPTNYDHAWMATPCPI
Ga0209188_10236244	F035193	GGA	MPHLIGELSPVVHPKRWDLIRLPVRKVNDEYIVYVADGFHRIYNDHTLPDVLKSKFAMILASEGKYMLDSRIIRMTLYTNTDFPELDEVGWRASETYFCLVVDRPTLESLKGGMQDDA
Ga0209188_10236246	F064395	GGAG	MNEEDRSNLRDLHAGFALVGLLMRGGTVTSLLAESAYEIADAMQEARDRHGVGIVSIKRQTKKEKANETS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1023624

Overview

Ecosystem & Geography

Associated Families

Sequences