Scaffold Ga0209188_1016375

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1016375
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3941
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061643	Metagenome / Metatranscriptome	131	Y
F078627	Metagenome / Metatranscriptome	116	Y
F090301	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10163754	F090301	N/A	MYYHNKKFGQDQSFSESARRVADLLWDTTGGDVSQFPKSYLETLRHDFSDGKISMLEIIDRVDLGAGATYDDYCEVVESLLKVDPTLWPDPNSVVEVPKGRLTYEVEPDFDFSEFDFADDITEEEVVAKDPGGEVAEEEISEKPSPTQQPDAMSDKMELFFKKVISSVYLDGVTDVTDQEGNPPNAANNYLMSPDGKQFTGIFYDAPPNEQAKKYPFAITENESGKWGIKY
Ga0209188_10163756	F078627	GAG	MKHLVVSFQSHVGERGCHFYDSDSCHFLSWKEVFKFTESFPKNDSGICFADRLTETLSNYNPDEEFLAVQQQGSSVSVELYRMN
Ga0209188_10163757	F061643	AGGAG	MNEEFSVFANKIVKYLNDATIVARLSHWNTRGQNFYECHLMFERIYNDLGELMDPLVEQLRACGFNPDFDLFKGPGISMEFYDCHTLSELTLDYLMALSSAVGLFYQFCEEHSHDPRLVAVGNQMQGMSSVILNDMYLLQSYLA