Scaffold Ga0209188_1011741

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1011741
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4914
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F004696	Metagenome	427	Y
F008359	Metagenome / Metatranscriptome	334	Y
F008491	Metagenome / Metatranscriptome	332	Y
F017128	Metagenome	242	Y
F025025	Metagenome	203	Y
F080039	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10117411	F017128	N/A	MNSNIVHSIDIEKYNSIEEQRNNTMNDTNFIQWCKQYNIGSRVAAVSEQRLKANDLMSQYTKYTNYISKRN
Ga0209188_101174111	F008359	N/A	MSKSKVNVKSNYDIKKVKRVMRMKSESFEPTTFEVFKVTGPNKFKKYFVSRKDAKLYIDTMTDTKMTLGIVKNIMNEIKMK
Ga0209188_101174112	F003691	N/A	MNSRMTNEFNQFTEVSYNTNRNERPIYRNFAASKLSSAVKPQSIVEFTDFMGRTHKVAVRNNTELKKQMKFFGMLKKESSTIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLTNKQLDIVLA
Ga0209188_10117412	F004696	N/A	MLVPHKNKKQMDYAIMKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNSITEQDIEDEDNYLKQVFATHPAKAKA
Ga0209188_10117414	F008491	N/A	MAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMMLILALGMSACGTSATTETKTEVKADTAKAVVADTAIAVK
Ga0209188_10117416	F025025	N/A	MSKKTNEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEASVRKYIGEIEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGVLVSNKLALDPTYSQFYNGGSISVETTTGNKEDTDK
Ga0209188_10117418	F080039	N/A	MKRSLNHNLVSEKIGYDYANKKMMIRVYDSLKYVVEDFTKKPTWTAVVKHMLTLDGMLGGQLCEVSVNGYYSTIRKNLKDIKVIKYNAHKCLVKGENWNRFFGDEDWSWFITNTNSGGYGIIVK