Scaffold Ga0209188_1003589

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1003589
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10616
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (93.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027400	Metagenome / Metatranscriptome	194	Y
F044297	Metagenome / Metatranscriptome	154	Y
F075663	Metagenome / Metatranscriptome	118	Y
F085341	Metagenome / Metatranscriptome	111	Y
F089841	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100358915	F075663	GAGG	MTKNETIALIIESIVNEGYKDADAFVTYVTMILPMMSTEELQAELSCLE
Ga0209188_100358916	F089841	GGAG	MNTIFLSKRHELRENYYVIPFSCSDLMNVNTEVSFRDRTETEQKVLDTITDRITLALYNQGYILQSVNFRNMSLSAIIDTKVSYR
Ga0209188_100358918	F044297	AGGAG	MGKMSEISIRLNELESMLYDNGLHYEPFIQECKLLCELGFAGEVQDIIWDFEYFIATNEG
Ga0209188_10035892	F027400	AGGAG	MTNSELISKLKQAQALLADVYHWADMPMSNGLQVSPLKTNAEIASQMSCADSCIIDALSELEQE
Ga0209188_100358924	F085341	GGAGG	MKYYRISFPGECGQHVEETWSEKQILGSSWYRNWVLMMVQADKAFLMHDQSAIDDWCVVHWAVEVEKVLV