Scaffold Ga0209188_1003241

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1003241
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11411
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F048306	Metagenome	148	N
F051912	Metagenome / Metatranscriptome	143	N
F076073	Metagenome	118	Y
F077278	Metagenome	117	Y
F085162	Metagenome	111	Y
F085693	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100324111	F085162	AGTAG	MLKKLKQIWHEIIERWFLLTFFTERMERERLQILAELVKRKDTLWKNLSVKQRTVKEILTYKEPKKKSINELVEEYEKKSPVIQDALYEALKNIQQKENGNSKETNNKD
Ga0209188_100324113	F076073	AGG	MAVVIDLVDQIEHMFSKEPDKRKKTEHKEWKDTINKLIQDCNKLCKFKMYFLIK
Ga0209188_100324123	F085693	N/A	MNTLQTTLTALQSQLESQKEASKYYYDNVFSKEVATLEASIVEWFYKFTGETYTIKIESGGETLQIYSSEADVKDMWRHNAITINYYSRYKEEAKAKLSFYSKECEYDDTKTIAYLKTLGMVAVLLNQINFMMPVWKAEYQQYAQKRYATFEQPISHTEFAIRKTEAEILEQGLASYKQAGFTHTISSRTECERQYNIDRDLEGAYTLETKPQYFDLQTGRGRYDNVRVYAFEVVGHIKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIATVYNWENFDSVKYNAKQTERYLDHMSKFTTVVEVA
Ga0209188_100324125	F077278	N/A	MTILQTTVDSASVGSAFMQYGILGILAFLLGYFAWQQYLRLVKKNEQLEEKIDKLQEQMLKIIVEERDRLDTLIRDNTAALQELQRTIYKYMVKSKE
Ga0209188_10032413	F051912	N/A	MTEKEKAESMVDEFYQYTNTNSRENAKACAKIMAKEVLVKLKYYGAPQHAVEFWEETVLQIDRVPAFKD
Ga0209188_10032414	F031482	N/A	MRNRYEKSPLSLIEGGSRIKITFKNGIEREYDNIKDVSAYVAKVLSESDYMINRIEMEKEVVTKEWKPLFGRHTYKSDLGNNFVNYNNYEI
Ga0209188_10032419	F048306	N/A	MTKEEAEFINQLCENSAVTWTQVHIEYQKKFVDPSQWLEAGGYQKGSPLPHGNQIEGNELCKRAQTFKN