Scaffold Ga0209188_1002995

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1002995
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12006
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F047567	Metagenome / Metatranscriptome	149	N
F068742	Metagenome / Metatranscriptome	124	N
F097184	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100299510	F047567	GGA	MISLEKLHATKREASAMLTEIVDRIKETEWMRETAKRAGIDPSEMYEVFKYGSKWRIRATEIHLYATEQLHRIHNQRGV
Ga0209188_100299519	F068742	GAG	MSQNISISIDLKLIDQKKLKRITRQNGAEAAFLDLLMIPTPNSPYGEWMIKQRSTKEEVEAQVQTPILGNGKTAVKWEGQ
Ga0209188_100299521	F035216	N/A	MIITYIILSSIIATGAFAVGRAQRRENRRLGAMVCEAHIPHRLETPVSEIAKLQMELELALLQLDSERLESDRLRSIIRSTMR
Ga0209188_10029958	F097184	N/A	MRAVCQVCGAVWAGATLGRLYHCDSATRAKIDQTKAQPYKVEKIASKVLGRTVCECGQPAVRSSSCDTSAKVCQRCHDCELGGYSVRPAKATADHTYRVRLPRQK