Scaffold Ga0209188_1001876

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001876
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16162
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.68%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F009134	Metagenome	322	Y
F010673	Metagenome	300	Y
F026825	Metagenome / Metatranscriptome	196	N
F028111	Metagenome / Metatranscriptome	192	N
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N
F074789	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10018761	F028111	N/A	VRLLDIERHPEFVKKYEGKITGVFESMKSVVGTDGDRLVGLLKSPENDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGEKSAEMSEAKADYDSIISKYQQENEQGTRAALESANKTWTKVSENARALEIFEPRENDEEWNTELNGRLNLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYSQVEINKRLKAELAKYRGSEPGVSSKATNPGFKSANTNSAKSEDFVANVMKSLGR
Ga0209188_100187611	F038648	N/A	MPSFTLPKGVEVPENLAEGEAFQTMATILLGKNGKAEVIEIDGMPIAGYEKKSKGKKMAEDHAENASEDESGHGGQMGGSKQGFIAEVMQRGAGPMS
Ga0209188_100187613	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPAGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFITYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRYADMGTGEGAQLLKRIGANRVIKNFRHVPNLFPPRYSYSGGKYTLVQPFTSTSGTKGTVFSVNSSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209188_100187615	F009134	N/A	LTSKASKEGITKVRKEMRNTISHKETVSIESLSAIVRSKLAADAASTLERIDSYDLDGIKDESTREQILGSVAKRSALVFGWSEQGESASVSINLLGSMPDRFAEVVVTSPV
Ga0209188_100187618	F074789	N/A	MSPEQIILEFRALESKRLVRICAEPETESYFSVFGEPDSAQERQQMLDTIENLGCWCVVSEFYADGAWHHSDSVGFCTGYENPLKPEENFYVVDLMRAAIDSLNRPEPV
Ga0209188_100187621	F010673	N/A	MNPKLIPILEKLIARDSVLSSFEARRLPLSARAYVRHLYRMDDSFTPDEQDLIEELPPFADDIADSFRAGTGGDDSVYHLFDDGSLWLKTNAYSSIWADARDFAVEILLPRMTLNRMDAQLLRAIDMEDAVDGVRQDFFTAFAGVLHRSCHIAHCDARSHWDAFTRQLDDGQREIIEFGGTETGESEGQSFAESFTVNA
Ga0209188_100187624	F002227	AGCAG	MKLTIQSKQNAQTIVDLFNAILTGEEAESGATPLSIYDDNKHICSLVAKDGHQILELIIEREEGDRLCPGTPDTETL
Ga0209188_100187625	F001964	GGAG	MSRNLFGKPVYKVQISGAIGWSDLKERVVRHETVEFATRKDAERAARELNPGEYTQGRIRVVPVELSEDYDIYPTAERSKP
Ga0209188_100187630	F003748	N/A	MFSVNRKDAGGRYIDAEGDYTVTVSKIEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPISEVDGDELDPKPF
Ga0209188_10018765	F026825	N/A	MTDHHTFFRDISIGVGGPIIGILGNAVLSDPHLKTVSLGLGALAALLTCAVKALELYRKLKTEK
Ga0209188_10018766	F001272	N/A	MIKIELTVEQANTLLQLIDIAIKAGGFQNAKVGVPLAEIILEAAKSQAPAAN
Ga0209188_10018769	F029798	N/A	MPIISCADAATLIAEAKGASCMSPRERILLEIGLLWEAATLGGTADITADNTVISADVTIITADMTEFL