Scaffold Ga0209188_1001697

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001697
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17180
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100169715	F046382	GAGG	MNNWPFGTDLSGSNWTGRTPRHRRVYSRYTKADEKIPVMAWVVGLTLLTAVFGLVPLLSWVMQ
Ga0209188_100169716	F018369	AGG	MKYSYIQLTDEGKRELLRDLSYHLTDKKIAELIDQYADGVKLDSNGEPFIKIDAQDVEDCAVPMYTHFLDINHVETVTTNEEDYE
Ga0209188_100169719	F016273	N/A	MNQTEQAILISWRLQQWHEGMVLDVRAMQDLQDAIEMLKKLAKQVQK