Scaffold Ga0209188_1001473

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001473
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18794
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011483	Metagenome	290	Y
F030055	Metagenome	186	Y
F071017	Metagenome	122	Y
F085366	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100147312	F005737	AGGA	MFDIEKYTKPTDWSQVALWIVSAAAIVVIILDVFFWRS
Ga0209188_100147313	F030055	AGGAG	MKHIATLPAVDARIMIDQGLEHLVVEHGDLTASLDCYFCPVTGNLWHAYLGTTELYNVLSATVIESLEREYAPLCA
Ga0209188_100147316	F071017	AGGA	MKDLLQTQSLEDSKMVKNLANQSSEQRLETQEILRQSEAREWVKRYRKKIKEEGKAEAYAWWHKTLSDLVKKRGQAAVDDLRKRMNDESSKN
Ga0209188_10014732	F011483	AGG	MTYDLVTYLRSEIKELHTILQETQLALAIANSKLQRKTEPLTNERIYTLYTRSLDWRQLARDVEADHDIE
Ga0209188_100147322	F085366	GAGG	MKEMNGKYGYGNQAKLAGNPSPEMKSNGSVKNNIPKAMTNMVGADKKFDGGKTSGVAYVHDRKCYQD