NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1001085

Scaffold Ga0209188_1001085


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1001085 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23174
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (22.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027773Metagenome193Y
F038143Metagenome166N
F088491Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100108510F038143AGGMVSQRLTPKHLKYLTSRSLTLHSNVDDSAHTDPLESIFPKRTLVLICGYARAGKDTLGDGILEWSEKNAEKINFADSLKDSANVFLDCLDLEGDFHDDRFKDTNRRFLVACGTFARDLKPSVFAEIMAQTVAQGYDDDGMALDTVVCTDWRYLNELIVCQKLLIPLGWKVRTVYISTSGISAANPEEANSICEIRDIVRFDQEYHFDTEQRQLIMHEGRMLAKQWSL
Ga0209188_100108513F088491N/AMNRDINKLANRLHQALEGIAQAKGKNKLPAKWVTRQEIANHFQVSKDAVDAYAKKHSLQFRVEKIQYACTGLIKTKLHYLPDFAQWKPLRYSNSIYWKRDDK
Ga0209188_10010855F027773N/AMKEVPMVTLDELVSGITNHNKLMTAEARMKALEIAGDRLAFLMLNGTTTEMKKAIWEWRELNPRKKDNE

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