Scaffold Ga0209188_1001071

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001071
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23459
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N
F013760	Metagenome / Metatranscriptome	268	Y
F024791	Metagenome / Metatranscriptome	204	N
F028165	Metagenome / Metatranscriptome	192	N
F051927	Metagenome	143	N
F058132	Metagenome / Metatranscriptome	135	N
F097201	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100107110	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDIAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVEANSLKVGK
Ga0209188_10010712	F058132	N/A	MALSNLKQIPKDADRGILVIDLSDIAGDGAELRFREPKAADLFPDSKELQTLRVAFAEFPEAMLYQIYLLGRCYVPDPTDTAEESPLRAFGNLARTSKQTFFRILGEFIAWYPTDDLQGRVKDAKNDSEV
Ga0209188_100107121	F013760	GGAG	MGRNQMIPFAIGALVGAGCVVVWSEMYTRWLYKDVKRRAKAQGITDQQMRDALLWAATENIEDSIGK
Ga0209188_100107123	F028165	AGGAG	MAIAFSIEEKKERIRQAMEIYNTTGTWSKADDVVRRQSVEKWLRNPELLAYAQSLGYQQMCTDEVAGFAPVTAHYTARMAFSGALVHMRDGKYLCRDGARIHYAVQHGQLVMYKLDGAGVRHHAGPAYFRGADVMAADWMIIR
Ga0209188_10010713	F024791	AGGAG	MPFTRTFALIGENCVVTVAFGGYQDGTPSAFTADTYTCIAKSVRFSTSVNTVDVSALCDLQNKAQATKANGSVEIEFLVDAGVGPIFYAKDGYYCQIVVTPGSLTAKTFVGVVTSTGISVATEEAVTESATITLGSNGVTTAWS
Ga0209188_100107131	F051927	GGAG	MRRCIECGSEVIDFDKTCTACRLAEWRDQQEQAQRLRERAYALEANRSAYLGRKRAVRDSIRAGVVTAVSVLLFLALISATRDAMRYEWETKPALLKHNGVK
Ga0209188_10010714	F007170	AGG	MAFEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTTAPQVDPVSRRPPQLPYVVFSRSGNAGQDQDVLCGSRVFTYPTYRITVWDSESGAMSMSNIQTTMSRIDALLDNQTVTSTTPRLYVRRTSTDQTFSLSDGGRTDFGVTAVYRFVTQQ
Ga0209188_10010715	F097201	N/A	MSFSLKKVRLDSYQRNLRQLSVAVGNAAAGIEGEAKSSIMMSSGQYKKYPGRKEHPHWSSPPGTPPNADMGDSGLAGSIQSKMTGKTSAEVNVGAKYGIPLELGWISRGGNHVPARPFLRPAVEKVAPSFQAAVKVILKGKS
Ga0209188_10010716	F009888	AGG	VALIFDLTEDPQQIVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGAAYSFVSGSVTLTKQYSAQGIMSVLNPAAYPTAAMVRLTVSFTVGSTVRRFGPLEIEVLAP