NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1001071

Scaffold Ga0209188_1001071


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1001071 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23459
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (86.11%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F013760Metagenome / Metatranscriptome268Y
F024791Metagenome / Metatranscriptome204N
F028165Metagenome / Metatranscriptome192N
F051927Metagenome143N
F058132Metagenome / Metatranscriptome135N
F097201Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100107110F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDIAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVEANSLKVGK
Ga0209188_10010712F058132N/AMALSNLKQIPKDADRGILVIDLSDIAGDGAELRFREPKAADLFPDSKELQTLRVAFAEFPEAMLYQIYLLGRCYVPDPTDTAEESPLRAFGNLARTSKQTFFRILGEFIAWYPTDDLQGRVKDAKNDSEV
Ga0209188_100107121F013760GGAGMGRNQMIPFAIGALVGAGCVVVWSEMYTRWLYKDVKRRAKAQGITDQQMRDALLWAATENIEDSIGK
Ga0209188_100107123F028165AGGAGMAIAFSIEEKKERIRQAMEIYNTTGTWSKADDVVRRQSVEKWLRNPELLAYAQSLGYQQMCTDEVAGFAPVTAHYTARMAFSGALVHMRDGKYLCRDGARIHYAVQHGQLVMYKLDGAGVRHHAGPAYFRGADVMAADWMIIR
Ga0209188_10010713F024791AGGAGMPFTRTFALIGENCVVTVAFGGYQDGTPSAFTADTYTCIAKSVRFSTSVNTVDVSALCDLQNKAQATKANGSVEIEFLVDAGVGPIFYAKDGYYCQIVVTPGSLTAKTFVGVVTSTGISVATEEAVTESATITLGSNGVTTAWS
Ga0209188_100107131F051927GGAGMRRCIECGSEVIDFDKTCTACRLAEWRDQQEQAQRLRERAYALEANRSAYLGRKRAVRDSIRAGVVTAVSVLLFLALISATRDAMRYEWETKPALLKHNGVK
Ga0209188_10010714F007170AGGMAFEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTTAPQVDPVSRRPPQLPYVVFSRSGNAGQDQDVLCGSRVFTYPTYRITVWDSESGAMSMSNIQTTMSRIDALLDNQTVTSTTPRLYVRRTSTDQTFSLSDGGRTDFGVTAVYRFVTQQ
Ga0209188_10010715F097201N/AMSFSLKKVRLDSYQRNLRQLSVAVGNAAAGIEGEAKSSIMMSSGQYKKYPGRKEHPHWSSPPGTPPNADMGDSGLAGSIQSKMTGKTSAEVNVGAKYGIPLELGWISRGGNHVPARPFLRPAVEKVAPSFQAAVKVILKGKS
Ga0209188_10010716F009888AGGVALIFDLTEDPQQIVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGAAYSFVSGSVTLTKQYSAQGIMSVLNPAAYPTAAMVRLTVSFTVGSTVRRFGPLEIEVLAP

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