Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1001019 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1001019 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24091
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (82.98%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24091

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (82.98%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040597	Metagenome / Metatranscriptome	161	Y
F051128	Metagenome / Metatranscriptome	144	N
F054848	Metagenome / Metatranscriptome	139	Y
F087184	Metagenome / Metatranscriptome	110	N
F091943	Metagenome / Metatranscriptome	107	N
F093301	Metagenome / Metatranscriptome	106	N
F101152	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100101913	F093301	GGAG	VTTLVAIQGDGWSVIGCDSRSSDESGRYLEMATHKVVENNGILIAGSGAGRGSNILQFGWRAPRPKAGQDLDVFMTKTFIPSMRKVFVESGYDMKADGEAAAHDSEFIVSVYGVLYPIYEDYSWDREERNVYHSGSGSDLALGVLEALNYQKCKTAKEAEKIVYRAVEIAIKHDIYSGGNIHTFIQEE
Ga0209188_100101914	F087184	AGGA	MNIEDLVSQIESGTFDSGLVKIKDAVDSRLKASRVSRTIADYHIGDTVVFNDLTGTRYMVGRKATVTGMKQKKVVVRLETPVGRFEKINPITGKSESADIVVPVAIIDLVK
Ga0209188_100101916	F091943	AGGA	MQKKWCLLKSSDGQRGANGKRKIYEVTVDGPVVRTSWGMAEKPVRQNEIKNYRDEFYARQMAFMKVQEKLNKGYELAYAV
Ga0209188_10010192	F051128	N/A	MAHTPDLPKSEAEFLASLSKEQLWRRVKDLNDAGWTLQSIADAFSPPRRRSTIRSWVIKDTPEFEFITATPTPPQPKAKSRRKRPRSPGIPLHEQLHIARLSPVARRFRARTNPSSVSFTANQELTSIAGLLYNKGVTVSELARASGVTYRAMKRRVDKALTQ
Ga0209188_100101926	F040597	GAG	MSKNASAGIWEIRDVHTGERISKFRARKRADVDRMLQMASVGLKRPLADFEAVYLTDWE
Ga0209188_10010196	F054848	GAGG	MTTATVTPNQAAALYSAGKSVDEVAKELSITYGKARKLIADSGTPIRNTSDRLKGKTRKV
Ga0209188_10010197	F101152	AGGA	MTQGTVQRDKIYVYDNCQQCGEQNVLVYECGEQLLCAEHYRDKARTVKRVTPCDKCGAGNAVRDPSHRRNEYLCWSCHQENGFAVDSSIVKRAIVSLVNNFTQGTKIKCDAAGYGTDCDNNIKPRGPWNGRSLCDKHGKIPPKPVKSKKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1001019

Overview

Ecosystem & Geography

Associated Families

Sequences