Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000790 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000790 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28638
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (81.40%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28638

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (81.40%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F006544	Metagenome / Metatranscriptome	370	Y
F006739	Metagenome / Metatranscriptome	365	Y
F008808	Metagenome	327	Y
F031484	Metagenome / Metatranscriptome	182	Y
F041080	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100079017	F041080	GAGG	MSATAIQNIADEISALASEVAYLAMSVDTSSDYPTRGTIVKALPTQNRFKAKSMWVSLGDGTYKHLTGGKGLITTHARLDGYVSTVFEA
Ga0209188_100079026	F001515	GAGG	MTNKSSFDLDFGYGRKGEKLVEELLTGGKTVEVKRDRKWWITNNLYIEVECWFMKSKSWEPSGLSVTEAAYWAFVLEQTVIIVPTHILKKGVLELGREISCEIPPNKSKGYLITVEDLLTMSRKYKNEKVDDGLEAN
Ga0209188_100079028	F008808	AGCAGG	MKPIKPCPECGEQFDNVFDATDHLLEEDEEFDPALILPNGYRLMIGSLLRCFYRYADEPEKIKNVAQDTYMTLFTVEMEPSTVVEVIEDMIVGSSMAEIDDELKQLLEGGE
Ga0209188_100079037	F031484	AGGAG	MNTEKIAAIVTTYARAAVPTVVALYASGTTDPKALVYAFLSAFIAPIWKALDPKAKEFGIGSKK
Ga0209188_100079043	F006739	N/A	QAKATIATPRQRVIQFPVYCFDLETDRYNSMIGYEGKAFEKVLALEEIEQTGDVLTWQDLTTGESRQAVIEQIQFTRGTPPDKRFSGFGGVIQVTIRTV
Ga0209188_10007907	F006544	AGG	MTTLAAIQGNGWVVMGCDSRSSDEEGRPMQMATHKIVENNGALIAGSGAGRGSNILQFGWKAPKPTAFENLDIFMTQKFIPSMRKAFIDAGYDMKEDGDAASHDSQFLISIRGTIYPIFEDYSWDRDIRGIYYSGSGSPIALGAMAALGIDDVQNVTQAERLVRKAIEIATEWDIYTSGPIITKTQFIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000790

Overview

Ecosystem & Geography

Associated Families

Sequences