Scaffold Ga0209188_1000680

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000680
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31577
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012658	Metagenome / Metatranscriptome	278	Y
F054798	Metagenome / Metatranscriptome	139	N
F074795	Metagenome	119	Y
F074805	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10006801	F054798	N/A	VGKDDIENIMIYLNINEIERLAEIVAELVKLGMSVNAELKYDRW
Ga0209188_10006802	F074795	GAG	MSKDEAIIKVLKVLKSAMMVMCKPNRDEALTLAEEYGITAKDLIEVWEKMTLRI
Ga0209188_100068027	F012658	N/A	MMNNLDKIFSAMRAGKYHCVIDPKGNAHVGLINGIMREDGSGKNWIVTVTNRTASEQVFIHAS
Ga0209188_10006809	F074805	N/A	MDVVIDFQFERVSMNDVILFGSILSAAAVAVVGFVFYSVYGGSKASLANAQEGQVFNFVYQQPLHGTHERFLAKVIGKQTLTADQIARLNRKSRYRAGDPEFIRTSNLVTCRTADGKVRNFYAERVSNCRKPLLAKVLFKSGVASLL