Scaffold Ga0209188_1000556

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000556
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35337
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F011483	Metagenome	290	Y
F012435	Metagenome / Metatranscriptome	280	Y
F021045	Metagenome / Metatranscriptome	220	Y
F030055	Metagenome	186	Y
F031035	Metagenome	183	Y
F035727	Metagenome	171	Y
F062385	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100055610	F021045	N/A	MAQSSVQRNAGQTVALSVTSTAHAAVLIDDSTNDQINYTAFLNTGAAPIAVKWGTADPGAPAFPVDGTNGDFVLAAGMTTPLILATPTTPYYLTAKSNSATAGILYVTPAADQS
Ga0209188_100055621	F031035	GAG	MKEIIQMRINDLMAKGRELEQQLHQINGALQQCQWTLAELEKDDAEKVDQPESI
Ga0209188_100055624	F062385	AGGA	MGYEAKKIPSAISSDMTGEKKVSVPKMDREYGGAKSMTGATPPKGATSSDTSGERKMKIQGGVGMGMADGIGLREASHMGMHDGRKGEMKGGTSEATCYEHKRYEHAQDK
Ga0209188_100055628	F011282	N/A	MKKIKNLVVITGTYTNKDGQEKKRYQTIGSLFEDGENLKIKLDTIPLVDGGWTGWANCYELEAPAQKPRKMGFDDMPDDIPF
Ga0209188_100055632	F005737	N/A	MKVLTMFEIEKYTKPTDWAQVALYVVSVVAIIVVILDVFFWRA
Ga0209188_100055633	F030055	AGGA	MRHIDTLPFVDAKIMIDQGLEHLSIEHGDMAVPVDCYFCPVTGNLWHCYLGTTELLGVMSATAIAELEREFAPKSLYESADYV
Ga0209188_100055637	F035727	GGAG	VNEEHRQVANSILARLKDGEEFSRSTVDQALRDTGDIAPDGSKGLDQEIQQEIDGGWETGCISMVAASLIRLSEKAWDESRRRITETHE
Ga0209188_100055645	F011483	GAGG	MSDLVTYLRSEIKELHTILQETQLALAMANSKLQRRTEPLTDERIYILYTRSLDWRQLARDVEADHDIE
Ga0209188_100055651	F012435	N/A	MEIDPVKYGVLWQKVESLEAKIDKLETSMDRLLELANQSKGGFWMGMAVVSAISSIAGYLTNWLHKG