Scaffold Ga0209188_1000531

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000531
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36384
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (61.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007524	Metagenome / Metatranscriptome	349	Y
F014848	Metagenome / Metatranscriptome	259	Y
F022196	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100053116	F014848	AGGAGG	MTRYYDTIVAFERDGFDIIVDKTYEDMHPRDSFDDSCHDVDEICKDIDNGQLEWFMLRVRVLVEGLELGSAYLGGCLYEDPKEILTDGTAEDFIAEAMTEAKSKVYSMYKRFQELSFNIDAEGINA
Ga0209188_100053120	F000652	N/A	VTTIIRQELEVPDSWEREDVLDFLSEVQSFRTAFQGVSNEDQTARIIDLGVVEEEITELGEESFDA
Ga0209188_100053137	F022196	AGGA	MTTVPKPIPSSTGGVITYTPTGLIHSAGKAYSGKIAQQEAKGK
Ga0209188_10005314	F007524	AGGA	MSKQMTQHAVAINKLMIPLVNTVAFYDENETDFIMFKMCADDITHNAAALQVFNNTLNAAQLHDNIMRQDTLPREHFYTVLKYIEDNKLIPARQYACS
Ga0209188_10005316	F007524	N/A	MRKVTRAHAVAINKLMLPLINTVCGYFDPTDNDIDLFKMYADDIAHNVAALCVFNSTLDASVLHNNIMLQDTSPREHFYTVLKYIEDNALINANAFCCS