Scaffold Ga0209188_1000506

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000506
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37634
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (27.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F083886	Metagenome / Metatranscriptome	112	N
F095140	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100050637	F095140	N/A	MNTKNLAGYGSIIMSLLTALAAAPYSLGEVATIIPPEWKQRVFIAGAIATLLLRIIRDNTTPTNPTQPTP
Ga0209188_100050638	F083886	N/A	MLRNEIFGDVWRGLVGIAGSWVAVISSVHEDIDSIAKTAGMILGCLASLAMLISLCQRIISNWQRENDSKNDIDDLKDIKEKLDE
Ga0209188_100050639	F022372	N/A	MSTTITINVAFLTEDQRDAATLLFARSGGWQSLVDGEPNPVSAEDYGVTMIANYLRQRVSEQSAYDAQIAAAQAVADLLDGVSVTTPAEFNALFPTPPITTPV