Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000451 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000451 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39819
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (91.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

39819

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (91.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F012327	Metagenome / Metatranscriptome	281	Y
F037689	Metagenome	167	Y
F048932	Metagenome	147	Y
F066436	Metagenome	126	N
F089837	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100045126	F003065	AGGAG	MTEPELNIWERALGWRKRQMIQRQLDPISNKIRNDALEEVAKEFDKMVGDTPASFAVYVRSMKKVNND
Ga0209188_100045136	F048932	AGGA	MDYPNRGTLWANGYKTTDAQPDMKGDIKLELDLVKDLLENAESDHIVIKLSAWLGKDKEGKRRVSLQYDSYKKDAPVASSAKDPWDD
Ga0209188_100045137	F037689	AGGA	MIKDEKRSHSEWVKICSQLNDALKSSIKDEDNLRVVIDNLEEKVGKLEEQLTMSIGVIKYLELQIARSNTVRSNKDRA
Ga0209188_100045141	F066436	GAGG	MDEHQANLKDLASMLILAALIISERDGENLAEEAHEIADQWLEARNNEPAEGLAAIKKRKRNGRKSEELG
Ga0209188_10004515	F012327	GAGG	MVEKYLKHLIQKVDDKVSQLQISMADGKAEDYAEYKKMCGEVKGLLTARLFITDLQERVTNDDDE
Ga0209188_10004519	F089837	GGGGG	MSCCSCCAQSVIGLHCLGVFDIFGAFLFHTHENTMPQKLTRAQIKAGLDQVPIETLLSSGEGKTPRLTSKQKAFAHAVALGETKASAYRQSYNPKPAKSTIVTAPYKLAADARIKREIEAYKLAIEAEKHRTPAQLKALLVQQLVEHSLNDDFPPAQRMKALQLIGNLFEVGAFLERKESVVVHKSSDIRTRLLERLGRVTDVTAKDNGSTLMEEIKGAGSAESADGTPTGGAPPQEGTGAHGAHTHTISLIQSSSKKGGVPPSEIVDVVSDFDKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000451

Overview

Ecosystem & Geography

Associated Families

Sequences