Scaffold Ga0209188_1000433

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000433
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40589
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F035670	Metagenome	171	Y
F086588	Metagenome	110	Y
F093497	Metagenome	106	N
F098900	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10004332	F000166	AGGAG	LFCEHQLGLIQMNIPTSQDAEFFALCVKKWQSILNLSDWRIEKGLKPAKQAMASVEFNEGARLATYRLGDFSAEKITHESLDATALHEVLHVFLHDLMTAAQDPKSSAEEIEKQEHRVINLLERLLTKDSNGFN
Ga0209188_100043341	F086588	AGG	MIKYDGYDEAIIGPAYIWRDNTTVGVLVYDAEKIREILMRDGCSAEEAREFIEFNIEGGYLGIETPVLVWPDDIWDEEE
Ga0209188_100043342	F035670	AGG	MTEPELNIWEKALGWRKRQMVECQINEVSNKIRNDTLEEVAKEFDKMKAFGDTSASFASFVRGMKR
Ga0209188_100043358	F093497	AGGA	MATKYPNSGMLGKAKQPKINPNSPDYTGSIDVDISLIKEMLEDAREEGADSINMKIGAWIKEGQFGKFFSIKVNNYKKPAAQQRATPVNDDDIPF
Ga0209188_100043360	F098900	AGGAG	MEDNRLVPYSVHLKKDIYDKLKLAAGQRKASALVRDAITMIVEGDDAFNAGYNKGVRDSILEIYEDDIASRIHFDDEVISVRLVERLEVMIVNQNVKAKSNAKKKT