NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000258

Scaffold Ga0209188_1000258


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000258 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57391
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (75.47%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F006506Metagenome / Metatranscriptome371Y
F010245Metagenome / Metatranscriptome306Y
F010472Metagenome303Y
F011276Metagenome292Y
F013757Metagenome / Metatranscriptome268Y
F017266Metagenome241Y
F029335Metagenome / Metatranscriptome188Y
F034176Metagenome / Metatranscriptome175Y
F042897Metagenome157Y
F093145Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_1000258102F029335AGGAGMRTITTLRNGNIYQMDIQEAIDIVQAYARQNTGGDLLQAATEMTDLATLDELPTIQKIAIRRFMRDMGRLLAPVDVETV
Ga0209188_1000258104F013757AGGAGMLTQCIAKAKLVYNKKLQSYKLVVAFNTHKTIKKIGNTEVVKYNFPTQAKCAYVSGDLLANNLQNELANVMPNVYKAIRTNTVEFVD
Ga0209188_100025825F042897GGAGMATKEAVAQIAMLPERVGIVETKVESLKEQIVDLKADVKDMHECLDNTRDVVLAQLDKMTNEYRSNAEKYYEHANHLNEQQSAQHNELAGKIGDLEKVKNKYTTYAMVGLAFAAGTGWINAVNFPHILKFLGL
Ga0209188_100025840F010472AGGAGMSVLTELMNSGHPWAAERAQYALQVHESVGAGLLSGSEAKEILQDLISTDKLEEAAADQQARAALVFGVTQLISLY
Ga0209188_100025842F006506GGAGMKQLLVVLAFLSLTGCASIMEMIPSRWDVNQAKVITDIQVQANHFDCKADQASQLSALAINVEWFDTYARTKPTRDIAKLTDTITTTVKEYQDRLKTGPVSPLYCDLKLKIIKQQTEILTGSVQGRF
Ga0209188_100025867F001008GAGMSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSEGNPDGVWMHPGDVGLNIQTIAALDLIISHFVTTEDEIK
Ga0209188_100025871F011276N/AMSEDEREHRGTVRSQRMIKGIMGNKGVTVSGGDVSTPYINNNSSNPIQGMIRLWGNDFQVFDGSMWVQLASSYATVSLDQDTQDLLTWARTQRTLERNRAVLIELNPALEKAYKAVLRAEANFEILSKFVENDLDAELRELAP
Ga0209188_100025877F017266AGTAGGMGKSYVNSIMQGWYASMREKYTPTIKWQRLPGLKLQAYTDQVGPRGFERGLNETDMDPVQAWTDECRCGTRMSFNVWKFKSEKQITMFLIRWAS
Ga0209188_100025878F034176AGGTGGMRHPNLKHRDNAGDLEYFISKFECRVEDSREYNQYVRPAPYYRDVCSSDDWRMETKITPMKAIHLTSDNLARLVAEQEHIQHLSADAEYGKKCWDHERRDRIVRESNPAVDKAYQKYVMLLELARK
Ga0209188_100025892F093145N/AMTEEEKDARLEQLVEAIDQVISQYPDFEPHNIAGVLLSRITLLMSSDTETGKALLKFVWEKLDELEQSNPNQYL
Ga0209188_100025899F010245N/AMKTKRTARKDSNFVIYCAFHNGLAYIGLTRKGSTTVSKAVKERWRKHISRARHEDRDWELYRYIKKGHWDGWTHTVLDVIRGRAEAYAYERELVKQIQPELNDQYR

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