Scaffold Ga0209188_1000258

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000258
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57391
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (75.47%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F006506	Metagenome / Metatranscriptome	371	Y
F010245	Metagenome / Metatranscriptome	306	Y
F010472	Metagenome	303	Y
F011276	Metagenome	292	Y
F013757	Metagenome / Metatranscriptome	268	Y
F017266	Metagenome	241	Y
F029335	Metagenome / Metatranscriptome	188	Y
F034176	Metagenome / Metatranscriptome	175	Y
F042897	Metagenome	157	Y
F093145	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000258102	F029335	AGGAG	MRTITTLRNGNIYQMDIQEAIDIVQAYARQNTGGDLLQAATEMTDLATLDELPTIQKIAIRRFMRDMGRLLAPVDVETV
Ga0209188_1000258104	F013757	AGGAG	MLTQCIAKAKLVYNKKLQSYKLVVAFNTHKTIKKIGNTEVVKYNFPTQAKCAYVSGDLLANNLQNELANVMPNVYKAIRTNTVEFVD
Ga0209188_100025825	F042897	GGAG	MATKEAVAQIAMLPERVGIVETKVESLKEQIVDLKADVKDMHECLDNTRDVVLAQLDKMTNEYRSNAEKYYEHANHLNEQQSAQHNELAGKIGDLEKVKNKYTTYAMVGLAFAAGTGWINAVNFPHILKFLGL
Ga0209188_100025840	F010472	AGGAG	MSVLTELMNSGHPWAAERAQYALQVHESVGAGLLSGSEAKEILQDLISTDKLEEAAADQQARAALVFGVTQLISLY
Ga0209188_100025842	F006506	GGAG	MKQLLVVLAFLSLTGCASIMEMIPSRWDVNQAKVITDIQVQANHFDCKADQASQLSALAINVEWFDTYARTKPTRDIAKLTDTITTTVKEYQDRLKTGPVSPLYCDLKLKIIKQQTEILTGSVQGRF
Ga0209188_100025867	F001008	GAG	MSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSEGNPDGVWMHPGDVGLNIQTIAALDLIISHFVTTEDEIK
Ga0209188_100025871	F011276	N/A	MSEDEREHRGTVRSQRMIKGIMGNKGVTVSGGDVSTPYINNNSSNPIQGMIRLWGNDFQVFDGSMWVQLASSYATVSLDQDTQDLLTWARTQRTLERNRAVLIELNPALEKAYKAVLRAEANFEILSKFVENDLDAELRELAP
Ga0209188_100025877	F017266	AGTAGG	MGKSYVNSIMQGWYASMREKYTPTIKWQRLPGLKLQAYTDQVGPRGFERGLNETDMDPVQAWTDECRCGTRMSFNVWKFKSEKQITMFLIRWAS
Ga0209188_100025878	F034176	AGGTGG	MRHPNLKHRDNAGDLEYFISKFECRVEDSREYNQYVRPAPYYRDVCSSDDWRMETKITPMKAIHLTSDNLARLVAEQEHIQHLSADAEYGKKCWDHERRDRIVRESNPAVDKAYQKYVMLLELARK
Ga0209188_100025892	F093145	N/A	MTEEEKDARLEQLVEAIDQVISQYPDFEPHNIAGVLLSRITLLMSSDTETGKALLKFVWEKLDELEQSNPNQYL
Ga0209188_100025899	F010245	N/A	MKTKRTARKDSNFVIYCAFHNGLAYIGLTRKGSTTVSKAVKERWRKHISRARHEDRDWELYRYIKKGHWDGWTHTVLDVIRGRAEAYAYERELVKQIQPELNDQYR