Basic Information | |
---|---|
Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000258 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 57391 |
Total Scaffold Genes | 106 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 80 (75.47%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Associated Families | 11 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001008 | Metagenome / Metatranscriptome | 807 | Y |
F006506 | Metagenome / Metatranscriptome | 371 | Y |
F010245 | Metagenome / Metatranscriptome | 306 | Y |
F010472 | Metagenome | 303 | Y |
F011276 | Metagenome | 292 | Y |
F013757 | Metagenome / Metatranscriptome | 268 | Y |
F017266 | Metagenome | 241 | Y |
F029335 | Metagenome / Metatranscriptome | 188 | Y |
F034176 | Metagenome / Metatranscriptome | 175 | Y |
F042897 | Metagenome | 157 | Y |
F093145 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209188_1000258102 | F029335 | AGGAG | MRTITTLRNGNIYQMDIQEAIDIVQAYARQNTGGDLLQAATEMTDLATLDELPTIQKIAIRRFMRDMGRLLAPVDVETV |
Ga0209188_1000258104 | F013757 | AGGAG | MLTQCIAKAKLVYNKKLQSYKLVVAFNTHKTIKKIGNTEVVKYNFPTQAKCAYVSGDLLANNLQNELANVMPNVYKAIRTNTVEFVD |
Ga0209188_100025825 | F042897 | GGAG | MATKEAVAQIAMLPERVGIVETKVESLKEQIVDLKADVKDMHECLDNTRDVVLAQLDKMTNEYRSNAEKYYEHANHLNEQQSAQHNELAGKIGDLEKVKNKYTTYAMVGLAFAAGTGWINAVNFPHILKFLGL |
Ga0209188_100025840 | F010472 | AGGAG | MSVLTELMNSGHPWAAERAQYALQVHESVGAGLLSGSEAKEILQDLISTDKLEEAAADQQARAALVFGVTQLISLY |
Ga0209188_100025842 | F006506 | GGAG | MKQLLVVLAFLSLTGCASIMEMIPSRWDVNQAKVITDIQVQANHFDCKADQASQLSALAINVEWFDTYARTKPTRDIAKLTDTITTTVKEYQDRLKTGPVSPLYCDLKLKIIKQQTEILTGSVQGRF |
Ga0209188_100025867 | F001008 | GAG | MSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSEGNPDGVWMHPGDVGLNIQTIAALDLIISHFVTTEDEIK |
Ga0209188_100025871 | F011276 | N/A | MSEDEREHRGTVRSQRMIKGIMGNKGVTVSGGDVSTPYINNNSSNPIQGMIRLWGNDFQVFDGSMWVQLASSYATVSLDQDTQDLLTWARTQRTLERNRAVLIELNPALEKAYKAVLRAEANFEILSKFVENDLDAELRELAP |
Ga0209188_100025877 | F017266 | AGTAGG | MGKSYVNSIMQGWYASMREKYTPTIKWQRLPGLKLQAYTDQVGPRGFERGLNETDMDPVQAWTDECRCGTRMSFNVWKFKSEKQITMFLIRWAS |
Ga0209188_100025878 | F034176 | AGGTGG | MRHPNLKHRDNAGDLEYFISKFECRVEDSREYNQYVRPAPYYRDVCSSDDWRMETKITPMKAIHLTSDNLARLVAEQEHIQHLSADAEYGKKCWDHERRDRIVRESNPAVDKAYQKYVMLLELARK |
Ga0209188_100025892 | F093145 | N/A | MTEEEKDARLEQLVEAIDQVISQYPDFEPHNIAGVLLSRITLLMSSDTETGKALLKFVWEKLDELEQSNPNQYL |
Ga0209188_100025899 | F010245 | N/A | MKTKRTARKDSNFVIYCAFHNGLAYIGLTRKGSTTVSKAVKERWRKHISRARHEDRDWELYRYIKKGHWDGWTHTVLDVIRGRAEAYAYERELVKQIQPELNDQYR |
⦗Top⦘ |