Scaffold Ga0209188_1000172

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000172
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71937
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (85.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012969	Metagenome / Metatranscriptome	275	Y
F025983	Metagenome / Metatranscriptome	199	Y
F103149	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100017222	F103149	AGGA	MFEFANFQLKDKQMRKLISALEDAGLDVSITPGKHHIKVVNSDTKQVVFFGQQSLGDFRAGKNILRDLKKVGFESNIKL
Ga0209188_100017236	F025983	AGGA	MRTENKSLNQSVNEGATDGKYRKVRPNTTVAPGTGEDITLANRRGLHPYWNYDFIDQETPNKVAPGSDEANSTPRAAMPVAHISNDQMLGTY
Ga0209188_100017275	F012969	N/A	MRGGDISNEIPMRVLVSLDCLLVREPRINKVLGISVPYIETTYDRRALAHFWRFKDTYEYSLELVGFERSQNDMDRILEDLDNLGTNPFNYAKAYNVVADLVAELPYRPEVKHVIDIPDRALRYGHWFLDEGRVNGRQ