Scaffold Ga0209188_1000128

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000128
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86758
• Total Scaffold Genes: 133
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (45.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030414	Metagenome / Metatranscriptome	185	Y
F041157	Metagenome / Metatranscriptome	160	Y
F054340	Metagenome / Metatranscriptome	140	Y
F060860	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000128107	F030414	AGGAG	MTNIELIQIDIINQIIASIDHGDLESARDTAIRFRDTLQEDVDKAESDIDIQLQLETESKFGK
Ga0209188_100012831	F054340	AGG	MAQLDTSGYTFTSQPTKAETERFEYAAFGYFDQNPGIVGNAFKSYIGIYYNDNGDNTE
Ga0209188_100012838	F041157	N/A	MDKPEIIDINYVGVFGKCYLVKYKGFSNVILKEDIKDWCKEVDNLNNS
Ga0209188_100012840	F060860	N/A	MYTHRQNEPQYNAGNFQEYDYELEWIECSWNITYKQIELVTAFFYPWIRNSV